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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 09:21:41 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/protg.html
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#====================================
# Aligned_structures: 4
#   1: 1gb4.pdb
#   2: 1pgx.pdb
#   3: 2gb1.pdb
#   4: 2ptl.pdb
#
# Length:         92
# Identity:       10/ 92 ( 10.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     45/ 92 ( 48.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           37/ 92 ( 40.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1gb4.pdb                1  ---------------------MTTFKLIINGKTLKGEITIEA-VDAAEAEKIFKQYANDN   38
1pgx.pdb                1  ELTPA----------------VTTYKLVINGKTLKGETTTKA-VDAETAEKAFKQYANDN   43
2gb1.pdb                1  ----------------------MTYKLILNGKTLKGETTTEA-VDAATAEKVFKQYANDN   37
2ptl.pdb                1  -----ENKEETPETPETDSEEEVTIKANLIFA-NGSTQTAEFKGTFEKATSEAYAYADTL   54
                                                  T Kl  ngk lkge T ea vda  Aek fkqYAndn

1gb4.pdb               39  GI-DGEWTYDDA-T---KTFTVTE--------   57
1pgx.pdb               44  GV-DGVWTYDDA-T---KTFTVTEMVTEVPVA   70
2gb1.pdb               38  GV-DGEWTYDDA-T---KTFTVTE--------   56
2ptl.pdb               55  KKDNGEYTVDVADKGYTLNIKFAG--------   78
                           g  dGewTyDdA t   ktftvte        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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