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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:09:33 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/recombinase.html
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#====================================
# Aligned_structures: 3
#   1: 1hcra.pdb
#   2: 1ret.pdb
#   3: 1tc3c.pdb
#
# Length:         71
# Identity:        0/ 71 (  0.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      9/ 71 ( 12.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           40/ 71 ( 56.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1hcra.pdb               1  GRPRAI------NKHEQEQISRLLEKG------HPRQQLAIIFGIGVSTLYRYFPASSIK   48
1ret.pdb                1  ------GRKRKIDRDAVLNMWQQG---------LGASHISKTMNIARSTVYKVINE----   41
1tc3c.pdb               1  --PRGS------AL--SDTERAQLDVMKLLNVS-L-HEMSRKISRSRHCIRVYLKD----   44
                                                 ql               s    i rst y y       

1hcra.pdb              49  KRMN-------   52
1ret.pdb               42  ----SN-----   43
1tc3c.pdb              45  ----PVSYGTS   51
                                      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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