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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sun Jul 24 01:45:47 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/response_reg.html
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#====================================
# Aligned_structures: 13
#   1: 1a04a.pdb
#   2: 1a2oa.pdb
#   3: 1b00a.pdb
#   4: 1dbwa.pdb
#   5: 1dcf.pdb
#   6: 1dz3a.pdb
#   7: 1i3ca.pdb
#   8: 1jbea.pdb
#   9: 1kgsa.pdb
#  10: 1nat.pdb
#  11: 1ntr.pdb
#  12: 1qkka.pdb
#  13: 1tmy.pdb
#
# Length:        173
# Identity:        3/173 (  1.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      6/173 (  3.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           88/173 ( 50.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a04a.pdb               1  ----EPATILLIDDHPMLRTGVKQLISMAPDIT-VVGEASNGEQGIELA--------ESL   47
1a2oa.pdb               1  M---SKIRVLSVDDSALMRQIMTEIINSHSDME-MVATAPDPLVARDLI--------KKF   48
1b00a.pdb               1  -----ARRILVVEDEAPIREMVCFVLEQNG--F-QPVEAEDYDSAVNQL--------NEP   44
1dbwa.pdb               1  ---MQDYTVHIVDDEEPVRKSLAFMLTMNG--F-AVKMHQSAEAFLAFA--------PDV   46
1dcf.pdb                1  ----TGLKVLVMDENGVSRMVTKGLLVHLG--C-EVTTVSSNEECLRVV--------SH-   44
1dz3a.pdb               1  -----SIKVCIADDNRELVSLLDEYISSQPDME-VIGTAYNGQDCLQML--------EEK   46
1i3ca.pdb               1  ---NPPKVILLVEDSKADSRLVQEVLKTSTIDH-ELIILRDGLAAA-FLQQQGEYEN-SP   54
1jbea.pdb               1  -AD-KELKFLVVDDFSTMRRIVRNLLKELG--FNNVEEAEDGVDALNKL--------QAG   48
1kgsa.pdb               1  -----NVRVLVVEDERDLADLITEALKKEF--T-VDVCYD-GEEGY--A--------LNE   41
1nat.pdb                1  -----NEKILIVDDQYGIRILLNEVFNKEG--Y-QTFQAANGLQALDIV--------TKE   44
1ntr.pdb                1  ---MQRGIVWVVDDDSSIRWVLERALAGAG--L-TCTTFENGNEVLAAL--------ASK   46
1qkka.pdb               1  ------PSVFLIDDDRDLRKAMQQTLELAG--F-TVSSFASATEALAGL--------SA-   42
1tmy.pdb                1  -----GKRVLIVDDAAFMRMMLKDIITKAG-YE-VAGEATNGREAVEKY--------KEL   45
                                        d                                              

1a04a.pdb              48  DP-DLILLDLNMPGMNGLETLDKLREK--S-L----SGRIVVFSVS-N---HEEDVVTAL   95
1a2oa.pdb              49  NP-DVLTLDVEMPRMDGLDFLEKLMRL--R------PMPVVMVSSLTG--KGSEVTLRAL   97
1b00a.pdb              45  WP-DLILLDWMLPGGSGIQFIKHLKRESMT-R----DIPVVMLTARGE--EEDRVRGLE-   95
1dbwa.pdb              47  RN-GVLVTDLRMPDMSGVELLRNLGDL--K-I----NIPSIVITGH-G---DVPMAVEAM   94
1dcf.pdb               45  EH-KVVFMDVCMPGVENYQIALRIHEK--F-TQRHQRPLLVALSG--N--TDKSTKEKCM   96
1dz3a.pdb              47  RP-DILLLDIIMPHLDGLAVLERIRAG--FEH----QPNVIMLTAF-G--QED-VTKKAV   95
1i3ca.pdb              55  RP-NLILLDLNLPKKDGREVLAEIKQNPDL-K----RIPVVVLTT--S--HNEDDVIASY  104
1jbea.pdb              49  GY-GFVISDWNMPNMDGLELLKTIRA--AM-S----ALPVLMVTA--E--AKKENIIAAA   96
1kgsa.pdb              42  PF-DVVILDI-LPVHDGWEILKSRE-SG---V----NTPVLLT-----ALSDVEYRVKG-   85
1nat.pdb               45  RP-DLVLLDMKIPGMDGIEILKRMKVI--D-E----NIRVIIMTAY-G---ELDMIQESK   92
1ntr.pdb               47  TP-DVLLSDIRMPGMDGLALLKQIKQR--H-P----MLPVIIMTAH-S---DLDAAVSAY   94
1qkka.pdb              43  DFAGIVISDIRMPGMDGLALFRKILAL--D-P----DLPMILVTGH-G---DIPMAVQAI   91
1tmy.pdb               46  KP-DIVTMDITMPEMNGIDAIKEIMKI--D-P----NAKIIVCSAM-G---QQAMVIEAI   93
                                   D   P   g                                           

1a04a.pdb              96  K-RGADGYLLK-D---------MEPE---DLLKALHQAAAG----EM------  124
1a2oa.pdb              98  E-LGAIDFVTKPQLGIREGMLA-YSE---MIAEKVRTAARA------------  133
1b00a.pdb              96  --TGADDYITK-P---------FSPK---ELVARIKAVMRR-I----------  122
1dbwa.pdb              95  K-AGAVDFIEK-P---------FEDT---VIIEAIERASEH-LV---------  123
1dcf.pdb               97  S-FGLDGVLLK-P---------VSLD---NIRDVLSDLLE-------------  122
1dz3a.pdb              96  E-LGASYFILK-PF---------------------------D-----------  108
1i3ca.pdb             105  E-LHVNCYLTK-S---------RNLKDLFKVQGIESFWLET-V--T-LPAAPG  142
1jbea.pdb              97  Q-AGASGYVVK-P---------FTAA---TLEEKLNKIFEK-LGM--------  126
1kgsa.pdb              86  -LNGADDYLPK-P---------FDLR---ELIARVRALIRR-KS-E-------  115
1nat.pdb               93  E-LGALTHFAK-P---------FDID---EIRDAVKKYLP----L--------  119
1ntr.pdb               95  Q-QGAFDYLPK-P---------FDID---EAVALVERAIS-------------  120
1qkka.pdb              92  Q-DGAYDFIAK-P---------FAAD---RLVQSARRAEEK-RR-L-------  121
1tmy.pdb               94  K-AGAKDFIVK-P---------FQPS---RVVEALNKVS--------------  118
                              g      K                                          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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