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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:02:33 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ribonuclease_T2.html
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#====================================
# Aligned_structures: 2
#   1: 1bk7a.pdb
#   2: 1bola.pdb
#
# Length:        252
# Identity:       45/252 ( 17.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     45/252 ( 17.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           92/252 ( 36.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bk7a.pdb               1  -----------------------FDSFWFVQQWPP-AVCSFQKSGSCPGSG--LRTFTIH   34
1bola.pdb               1  SSCSSTALSCSNSANSDTCCSPEYGLVVLNMQWAPGY--------------GPDNAFTLH   46
                                                          QW P                     FT H

1bk7a.pdb              35  GLWPQQSGT-SLTNCPGSPF-------------D-ITKISHLQSQLNTLWPNVLRANNQQ   79
1bola.pdb              47  GLWPDKCSGAYAP-SG----GCDSNRASSSIASVIKSKDSSLYNSMLTYWPSN-QGNNNV  100
                           GLWP                                 K S L     T WP     NN  

1bk7a.pdb              80  FWSHEWTKHGTCSESTF--------------NQAAYFKLAVDMRNNYDIIGALRPHAAGP  125
1bola.pdb             101  FWSHEWSKHGTCVS---TYDPDCYDNYEEGEDIVDYFQKAMDLRSQYNVYKAFSSNGITP  157
                           FWSHEW KHGTC                       YF  A D R  Y    A       P

1bk7a.pdb             126  NGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVQVVACFAQD-G--STLIDCTRD  182
1bola.pdb             158  G-GTYTATEMQSAIESYFGAKAKIDCSS------GTLSDVALYFYVRGRDTYVITDALST  210
                              T             FG      C          L  V   F           D    

1bk7a.pdb             183  TC-GANFIF---  190
1bola.pdb             211  GSCSGDVEYPTK  222
                                       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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