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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:12:30 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/rnr.html
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#====================================
# Aligned_structures: 3
#   1: 1r2fa.pdb
#   2: 1xika.pdb
#   3: 1xsm.pdb
#
# Length:        363
# Identity:       27/363 (  7.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    115/363 ( 31.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          105/363 ( 28.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1r2fa.pdb               1  -----------------------ISAINWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDI   37
1xika.pdb               1  -AYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDR   59
1xsm.pdb                1  N---------PSVEDE-PLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDI   50
                                                          i yd       k  s FW pEeVdlS Di

1r2fa.pdb              38  PAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHA   97
1xika.pdb              60  IDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHS  119
1xsm.pdb               51  QHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHS  110
                             wqaL   E h  i vl   tllD Iqn      l      pe e       fmE iHs

1r2fa.pdb              98  RSYSSIFSTLC-QTKEVDAAYAWSEENPPLQRKAQIILAHYVS--D--------------  140
1xika.pdb             120  RSYTHIIRNIV-ND--PSVVFDDIVTNEQIQKRAEGISSYYDE--LIEMTSYWHLLGEGT  174
1xsm.pdb              111  EMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEA--------------  156
                           rsYs ii t           f  ietnp  qkkA  il  y                   

1r2fa.pdb             141  -----------------EPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLI  183
1xika.pdb             175  HTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLI  234
1xsm.pdb              157  -----------------TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELI  199
                                                   a  alE i Fy sFa  f f  Rglm g a  irLI

1r2fa.pdb             184  IRDEAVHGYYIGYKYQIALQ---K-------LSAIEREELKLFALDLLMELYDNEIRYTE  233
1xika.pdb             235  ARDEALHLTGTQHMLNLLRS---GADDPEMAEIAE---ECKQECYDLFVQAAQQEKDWAD  288
1xsm.pdb              200  SRDEGLHCDFACLMFKHL-VHKP----------------AEQRVREIITNAVRIEQEFLT  242
                            RDEalH      m   l                      kq   dl   a   E     

1r2fa.pdb             234  AL--YAETG-------WVNDVKAFLCYNANKALMNLGYEALFPPEMADVNPA---I-LAA  280
1xika.pdb             289  YL--FR---DGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTR----SNPIPWI-NTW  338
1xsm.pdb              243  EALPVKLIG------MNCTLMKQYIEFVADRLMLELGFNKIFRVE----NPFD-FME---  288
                            l              n    kqy ey an  m  lG    F  e    np    i    

1r2fa.pdb             281  LSP  283
1xika.pdb             339  LV-  340
1xsm.pdb                   ---     
                              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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