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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 16:44:25 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/rvp.html
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#====================================
# Aligned_structures: 6
#   1: 1baia.pdb
#   2: 1difa.pdb
#   3: 1fiva.pdb
#   4: 1ivpa.pdb
#   5: 1ytia.pdb
#   6: 2fmb.pdb
#
# Length:        135
# Identity:       15/135 ( 11.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     20/135 ( 14.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           40/135 ( 29.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1baia.pdb               1  --LAMTMEHKDRPLVRVILTNTGSHPVKQRSVYITALLDTGADDTVISEEDWPTDWP---   55
1difa.pdb               1  --PQI--TLWQRPLVTIKIG----------GQLKEALLDTGADDTVLEE---------MS   37
1fiva.pdb               1  VGTTT--TLEKRPEILIFVN----------GYPIKFLLDTGADITILNRRDFQVK-N---   44
1ivpa.pdb               1  --PQF--SLWKRPVVTAYIE----------GQPVEVLLDTGADDSIVAG---------IE   37
1ytia.pdb               1  --PQF--HLWKRPVVTAHIE----------GQPVEVLLDTGADDSIVTG---------IE   37
2fmb.pdb                1  --VTY--NLEKRPTTIVLIN----------DTPLNVLLDTGADTSVLTTAHYNRLK-Y--   43
                                   l  RP                       LLDTGAD                 

1baia.pdb              56  -VME-AANPQIHGIGGGIPVRKSRDMIELGVINRD-GSLERPLLLFPLVA---MTPVNIL  109
1difa.pdb              38  LPGR-WKPKMIGGIGGFIKVRQYD-QILIEIC-------GHKAIGTVLVG---PTPVNII   85
1fiva.pdb              45  -SIE-NGRQNMIGVGGGKRGTNYI-NVHLEIRDE-NYK-TQCIFGNVCVLEDNSLIQPLL   99
1ivpa.pdb              38  LGNN-YSPKIVGGIGGFINTLEYK-NVEIEVL-------NKKVRATIMTG---DTPINIF   85
1ytia.pdb              38  LGPH-YTPKIVGGIGGFINTKEYK-NVEVEVL-------GKRIKGTIMTG---DTPINIF   85
2fmb.pdb               44  -RGRKYQGTGIGGVGGNVETFST--PVTIKKK-------GRHIKTRMLVA---DIPVTIL   90
                                       G GG                                       p  i 

1baia.pdb             110  GRDCLQGLGLRLTNL  124
1difa.pdb              86  GRNLLTQIGCTLNF-   99
1fiva.pdb             100  GRDNMIKFNIRLVM-  113
1ivpa.pdb              86  GRNILTALGMSLNL-   99
1ytia.pdb              86  GRNLLTALGMSLNF-   99
2fmb.pdb               91  GRDILQDLGAKLVL-  104
                           GR  l   g  L   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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