################################################################################################
# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sun Jul 24 01:55:26 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/sdr.html
################################################################################################
#====================================
# Aligned_structures: 13
# 1: 1ae1a.pdb
# 2: 1bdb.pdb
# 3: 1cyda.pdb
# 4: 1dfia.pdb
# 5: 1dhr.pdb
# 6: 1enp.pdb
# 7: 1fds.pdb
# 8: 1fmca.pdb
# 9: 1hdca.pdb
# 10: 1sep.pdb
# 11: 1ybva.pdb
# 12: 1zid.pdb
# 13: 2ae1.pdb
#
# Length: 432
# Identity: 3/432 ( 0.7%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 4/432 ( 0.9%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 253/432 ( 58.6%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1ae1a.pdb 1 --------------R-WSLKGTTALVTGGS--KGIGYAIVEELAGL--G---ARVYTCSR 38
1bdb.pdb 1 ----------------MKLKGEAVLITGGA--SGLGRALVDRFVAE--G---AKVAVLDK 37
1cyda.pdb 1 ----------------LNFSGLRALVTGAG--KGIGRDTVKALHAS--G---AKVVAVTR 37
1dfia.pdb 1 ----------------GFLSGKRILVTGVASKLSIAYGIAQAMHRE--G---AELAFTYQ 39
1dhr.pdb 1 -----------------E-A-RRVLVYGGR--GALGSRCVQAFRAR--N---WWVASIDV 34
1enp.pdb 1 -L------------P-IDLRGKRAFIAGIADDNGYGWAVAKSLAAA--G---AEILVGTW 41
1fds.pdb 1 -------------------ARTVVLITGCS--SGIGLHLAVRLASDPSQ--SFKVYATLR 37
1fmca.pdb 1 ---M------FNSDN-LRLDGKCAIITGAG--AGIGKEIAITFATA--G---ASVVVSDI 43
1hdca.pdb 1 N---------------DL-SGKTVIITGGA--RGLGAEAARQAVAA--G---ARVVLADV 37
1sep.pdb 1 --------------A-DGLGCAVCVLTGAS--RGFGRALAPQLARL--LSPGSVMLVSAR 41
1ybva.pdb 1 ----DAIPGPLGPQS-ASLEGKVALVTGAG--RGIGREMAMELGRR--G---CKVIVNYA 48
1zid.pdb 1 ---------------AGLLDGKRILVSGIITDSSIAFHIARVAQEQ--G---AQLVLTGF 40
2ae1.pdb 1 --A----------GR-WNLEGCTALVTGGS--RGIGYGIVEELASL--G---ASVYTCSR 40
G
1ae1a.pdb 39 -NEKELDECLEIWR-E---------K----G-L--NVEGSVC-DLL-SRT---------- 68
1bdb.pdb 38 -SAERLAELETDHG-------------------D-NVLGIVG-DVR-SLE---------- 64
1cyda.pdb 38 -TNSDLVSLAKECP-------------------G--IEPVCV-DLG-DWD---------- 63
1dfia.pdb 40 -NDKLKGRVEEFAA-Q---------L------G--SDIVLQC-DVA-EDA---------- 68
1dhr.pdb 35 -VE---------NE-E-----------------A--SASVIVKMTDSFTE---------- 54
1enp.pdb 42 VP--ALNIFETSLRRGKFDQSRVLPD-GSLM-E--IKKVYPL-DAV-FDNPEDVPEDVKA 93
1fds.pdb 38 -DLKTQGRLWEAAR-A---------L--AC-PPG-SLETLQL-DVR-DSK---------- 70
1fmca.pdb 44 -NADAANHVVDEIQ-Q---------L----G-G--QAFACRC-DIT-SEQ---------- 73
1hdca.pdb 38 -LDEEGAATARELG-------------------D-AARYQHL-DVT-IEE---------- 64
1sep.pdb 42 -SESMLRQLKEELG-A---------QQ---P--DLKVVLAAA-DLG-TEA---------- 73
1ybva.pdb 49 NSTESAEEVVAAIK-K---------N----G-S--DAACVKA-NVG-VVE---------- 79
1zid.pdb 41 -D--RLRLIQRITD-R---------L----P-A--KAPLLEL-DVQ-NEE---------- 68
2ae1.pdb 41 -NQKELNDCLTQWR-S---------K----G-F--KVEASVC-DLS-SRS---------- 70
1ae1a.pdb 69 ----------ERDKLMQTVAHV--FD-G---KL-NILVNNAGVVI-----H--K-EAKD- 102
1bdb.pdb 65 ----------DQKQAASRCVAR--F--G---KI-DTLIPNAGIWDY----S--T-ALVD- 98
1cyda.pdb 64 ----------ATEKALGGIG-----------PV-DLLVNNAALVI-----M--Q-PFLE- 92
1dfia.pdb 69 ----------SIDTMFAELGKV--W--P---KF-DGFVHSIGFAPGDQL-D--GDYVNA- 106
1dhr.pdb 55 ----------QADQVTAEVGKL--LGDQ---KV-DAILCVAGGWA-----G--G-NAKS- 89
1enp.pdb 94 NKRYAGSSNWTVQEAAECVRQD--F--G---SI-DILVHSLANGPE--V-S--K-PLLE- 138
1fds.pdb 71 ----------SVAAARERV--T--E--G---RV-DVLVCNAGLGL-----L--G-PLEA- 101
1fmca.pdb 74 ----------ELSALADFAISK--L--G---KV-DILVNNAGGGG-----P--K--PFD- 105
1hdca.pdb 65 ----------DWQRVVAYAREE--F--G---SV-DGLVNNAGIST-----G--M-FLET- 97
1sep.pdb 74 ----------GVQRLLSAVRELPRPEGL----QRLLLINNAATLG-----DVSK-GFLNV 113
1ybva.pdb 80 ----------DIVRMFEEAVKI--F--G---KL-DIVCSNSGVVS-----F--G-HVKD- 112
1zid.pdb 69 ----------HLASLAGRVTEA--I--GAGNKL-DGVVHSIGFMPQTGMGI--N-PFFD- 109
2ae1.pdb 71 ----------ERQELMNTVANH--FH-G---KL-NILVNNAGIVI-----Y--K-EAKD- 104
1ae1a.pdb 103 F----TEKDYNIIMGTNFEAAYHLSQIAYPLLKA--S-QNGNVIFLSSIAGFS-ALPSVS 154
1bdb.pdb 99 LPEESLDAAFDEVFHINVKGYIHAVKACLPALVA--S-R-GNVIFTISNAGFY-PNGGGP 153
1cyda.pdb 93 V----TKEAFDRSFSVNLRSVFQVSQMVARDMIN--RGVPGSIVNVSSMVAHV-TFPNLI 145
1dfia.pdb 107 V----TREGFKIAHDISSYSFVAMAKACRSML----N-PGSALLTLSYLGAER-AIPNYN 156
1dhr.pdb 90 K---SLFKNCDLMWKQSIWTSTISSHLATKHLK-----EGGLLTLAGAKAALD-GTPGMI 140
1enp.pdb 139 T----SRKGYLAAISASSYSFVSLLSHFLPIM----N-PGGASISLTYIASER-IIPGYG 188
1fds.pdb 102 L----GEDAVASVLDVNVVGTVRMLQAFLPDMKR--R-GSGRVLVTGSVGGLM-GLPFND 153
1fmca.pdb 106 M----PMADFRRAYELNVFSFFHLSQLVAPEMEK--N-GGGVILTITSMAAEN-KNINMT 157
1hdca.pdb 98 E----SVERFRKVVEINLTGVFIGMKTVIPAMKD--A-GGGSIVNISSAAGLM-GLALTS 149
1sep.pdb 114 N----DLAEVNNYWALNLTSMLCLTSGTLNAFQ-DSPGLSKTVVNISSLCALQ-PYKGWG 167
1ybva.pdb 113 V----TPEEFDRVFTINTRGQFFVAREAYKHL----E-IGGRLILMGSITGQAKAVPKHA 163
1zid.pdb 110 A----PYADVSKGIHISAYSYASMAKALLPIM----N-PGGSIVGMDFD-PSR-AMPAYN 158
2ae1.pdb 105 Y----TVEDYSLIMSINFEAAYHLSVLAHPFLKA--S-ERGNVVFISSVSGAL-AVPYEA 156
1ae1a.pdb 155 -LYSASKGAINQMTKSLACE-----WAK-DNIRVNSVAPGVIL----------------- 190
1bdb.pdb 154 -LYTAAKHAIVGLVRELAFE-----LAP--YVRVNGVGSGGIN--S---DLRGPSSL--G 198
1cyda.pdb 146 -TYSSTKGAMTMLTKAMAME-----LGP-HKIRVNSVNPTVVL--T---DM---GKK-V- 188
1dfia.pdb 157 -VMGLAKASLEANVRYMANA-----MGP-EGVRVNAISAGPIR--T---L---------- 194
1dhr.pdb 141 -GYGMAKGAVHQLCQSLAGKNSGMP-S---GAAAIAVLPVTLD--T---PM---NRK-S- 185
1enp.pdb 189 GGMSSAKAALESDTRVLAFE-----AGRKQNIRVNTISAGPLGSR-----A---AKAI-- 233
1fds.pdb 154 -VYCASKFALEGLCESLAVL-----LLP-FGVHLSLIECGPVH--T----VLGSPEE--V 198
1fmca.pdb 158 -SYASSKAAASHLVRNMAFD-----LGE-KNIRVNGIAPGAIL--T---DA---LKS-V- 200
1hdca.pdb 150 -SYGASKWGVRGLSKLAAVE-----LGT-DRIRVNSVHPGMTY--T---PM---TAE-T- 192
1sep.pdb 168 -LYCAGKAARDMLYQVLAAE-----EP---SVRVLSYAPGPLD--N---DM---QQL-A- 208
1ybva.pdb 164 -VYSGSKGAIETFARCMAID-----MAD-KKITVNVVAPGGIK--T---DM---YHA-V- 206
1zid.pdb 159 -WMTVAKSALESVNRFVARE-----AGK-YGVRSNLVAAGPIR--T---LA---MSA-I- 201
2ae1.pdb 157 -VYGATKGAMDQLTRCLAFE-----WAK-DNIRVNGVGPGVIA--TQDP----------- 196
K A
1ae1a.pdb 191 ------------------------QKEEIDNFIVK-TPMGRAG--KPQEVSALIAFLCFP 223
1bdb.pdb 199 --------------------------PLADMLKSV-LPIGRMP--EVEEYTGAYVFFATR 229
1cyda.pdb 189 S---------------A-------DPEFARKLKER-HPLRKFA--EVEDVVNSILFLLSD 223
1dfia.pdb 195 ---------------------------MLAHCEAV-TPIRRTV--TIEDVGNSAAFLCSD 224
1dhr.pdb 186 M-------P--------E---A-DF-----------S---SWT--PLEFLVETFHDWITG 210
1enp.pdb 234 -------------G---------FIDTMIEYSYNN-APIQKTL--TADEVGNAAAFLVSP 268
1fds.pdb 199 LD-RT---DIHT--FH-------RFYQYLAHSKQV-FR-EAAQ--NPEEVAEVFLTALRA 241
1fmca.pdb 201 I-----------------------TPEIEQKMLQH-TPIRRLG--QPQDIANAALFLCSP 234
1hdca.pdb 193 G-------IR------Q------G-EGN----YPN-TPMGRVG--EPGEIAGAVVKLLSD 225
1sep.pdb 209 RE--T---S-------KD----PELRSKLQKLKSD-G---ALV--DCGTSAQKLLGLLQK 246
1ybva.pdb 207 CR-EY---I-------PNGENL-SNEEVDEYAAVQWSPLRRVG--LPIDIARVVCFLASN 252
1zid.pdb 202 VGGALGEE---AGA---------QIQLLEEGWDQR-APIGWN-MKDATPVAKTVCALLSD 247
2ae1.pdb 197 -----------------------EQKENLNKLIDR-CALRRMG--EPKELAAMVAFLCFP 230
1ae1a.pdb 224 -AASY-ITGQIIWAD--GG---FTANGG-----F-------------------------- 245
1bdb.pdb 230 GDAAP-ATGALLNYD--GG---LGVRG------F------FS----GA------GGNDLL 261
1cyda.pdb 224 -RSAS-TSGGGILVD--AG---YLAS---------------------------------- 242
1dfia.pdb 225 -LSAG-ISGEVVHVD--GG---FSIAAM-----NE------------------------- 247
1dhr.pdb 211 -NKR-PNSGSLIQVV--T-TDGK-----TELTPAY------------------------- 235
1enp.pdb 269 -LASA-ITGATIYVD--NG---LNSMGV-----ALDSPVF-----------K-------- 297
1fds.pdb 242 P---K-PTLRYFT--TERF---LPLL-------R------MRLDD-PSGSNYVTAMHREV 278
1fmca.pdb 235 -AASW-VSGQILTVS--GG---GVQ----------------------------------- 252
1hdca.pdb 226 -TSSY-VTGAELAVD--GG---WTTGPT-----VK------YVMGQ-------------- 253
1sep.pdb 247 -D-T-FQSGAHVDFY--------------------------------------------- 258
1ybva.pdb 253 -DGGW-VTGKVIGID--GG---ACM----------------------------------- 270
1zid.pdb 248 -WLPA-TTGDIIYAD--GG---AHTQLL-------------------------------- 268
2ae1.pdb 231 -AASY-VTGQIIYVD--GG---LMANCG-----F-------------------------- 252
g
1ae1a.pdb ------------
1bdb.pdb 262 EQLNIH------ 267
1cyda.pdb ------------
1dfia.pdb ------------
1dhr.pdb 236 ----------F- 236
1enp.pdb ------------
1fds.pdb 279 -FG---DV---- 282
1fmca.pdb 253 --------ELN- 255
1hdca.pdb ------------
1sep.pdb 259 -----------D 259
1ybva.pdb ------------
1zid.pdb ------------
2ae1.pdb ------------
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################