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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 12:04:07 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/serbact.html
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#====================================
# Aligned_structures: 5
#   1: 1hpga.pdb
#   2: 2alp.pdb
#   3: 2sfa.pdb
#   4: 2sga.pdb
#   5: 3sgbe.pdb
#
# Length:        207
# Identity:       43/207 ( 20.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     88/207 ( 42.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           34/207 ( 16.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1hpga.pdb               1  --VLGGGAIY-GG-GSRCSAAFNVTKG-GARYFVTAGHCTNISANWSASSG-GSVVGVRE   54
2alp.pdb                1  ANIVGGIEYS-INNASLCSVGFSVTRG-ATKGFVTAGHCGT-VNATARI-G-GAVVGTFA   55
2sfa.pdb                1  --IAGGEAIYAAG-GGRCSLGFNVRSSSGATYALTAGHCTEIASTWYTNSGQTSLLGTRA   57
2sga.pdb                1  --IAGGEAIT-TG-GSRCSLGFNVSVN-GVAHALTAGHCTNISASWS--------IGTRT   47
3sgbe.pdb               1  --ISGGDAIY-SS-TGRCSLGFNVRSG-STYYFLTAGHCTDGATTWWANSARTTVLGTTS   55
                             i GG ai       rCS gFnV          TAGHCt     w          Gt  

1hpga.pdb              55  GTSFPTNDYGIVRYTDG-SSPAGTVDLYNGSTQDISSAANAVVGQAIKKSGSTTKVTSGT  113
2alp.pdb               56  ARVFPGNDRAWVSLTSA-QTLLPRVAN-GSSFVTVRGSTEAAVGAAVCRSGRTTGYQCGT  113
2sfa.pdb               58  GTSFPGNDYGLIRHSNA-SAADGRVYLYNGSYRDITGAGNAYVGQTVQRSGSTTGLHSGR  116
2sga.pdb               48  GTSFPNNDYGIIRHSNP-AAADGRVYLYNGSYQDITTAGNAFVGQAVQRSGSTTGLRSGS  106
3sgbe.pdb              56  GSSFPNNDYGIVRYTNTTIPKDGTVG-----GQDITSAANATVGMAVTRRGSTTGTHSGS  110
                           g sFP NDyg  r         g V        di  a nA VG av rsGsTTg  sG 

1hpga.pdb             114  VTAVNVTVNYGD-GPVYNMVRTTACSAGGDSGGAHFAG-SVALGIHSGSSGC--------  163
2alp.pdb              114  ITAKNVTANYAE-GAVRGLTQGNACMGRGDSGGSWITSAGQAQGVMSGGNVQSNGNNCGI  172
2sfa.pdb              117  VTGLNATVNYGGGDIVSGLIQTNVCAEPGDSGGALFAG-STALGLTSGGSGN--------  167
2sga.pdb              107  VTGLNATVNYGSSGIVYGMIQTNVCAQPGDSGGSLFAG-STALGLTSGGSGN--------  157
3sgbe.pdb             111  VTALNATVNYGGGDVVYGMIRTNVCAEPGDSGGPLYSG-TRAIGLTSGGSGN--------  161
                           vT  N TvNYg    V g   tn C   GDSGG    g   A G  SGgsg         

1hpga.pdb             164  -SGTAGSAIHQPVTEALSAYGVTVY--  187
2alp.pdb              173  PA-SQRSSLFERLQPILSQYGLSLVTG  198
2sfa.pdb              168  -CRTGGTTFFQPVTEALSAYGVSIL--  191
2sga.pdb              158  -CRTGGTTFYQPVTEALSAYGATVL--  181
3sgbe.pdb             162  -CSSGGTTFFQPVTEALVAYGVSVY--  185
                                g    qpvteaLsaYG      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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