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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Aug 12 23:27:07 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/MUSTANG_HOMSTRAD/results/sh3.html
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#====================================
# Aligned_structures: 20
#   1: 1aoja.pdb
#   2: 1ark.pdb
#   3: 1awj.pdb
#   4: 1bb9.pdb
#   5: 1bbza.pdb
#   6: 1ckaa.pdb
#   7: 1cska.pdb
#   8: 1gbra.pdb
#   9: 1gria1.pdb
#  10: 1gria2.pdb
#  11: 1lcka.pdb
#  12: 1pht.pdb
#  13: 1qcfa.pdb
#  14: 1qlya.pdb
#  15: 1sema.pdb
#  16: 1shfa.pdb
#  17: 1shg.pdb
#  18: 1ycsb.pdb
#  19: 2hsp.pdb
#  20: 2src.pdb
#
# Length:        139
# Identity:        2/139 (  1.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      3/139 (  2.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           96/139 ( 69.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1aoja.pdb               1  ----------------------------KKYAKSKYDFVARNSSELSVMKDDVLEILDDR   32
1ark.pdb                1  --------------------T--A----GKIFRAMYDYMAADADEVSFKDGDAIINVQ--   32
1awj.pdb                1  ----KKPLPPTPEDN---RRS--FQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDS-   50
1bb9.pdb                1  TTG---------RLDLPP--G--F----MFKVQAQHDYTATDTDELQLKAGDVVLVIPF-   42
1bbza.pdb               1  -----------------------------NLFVALYDFVASGDNTLSITKGEKLRVLGY-   30
1ckaa.pdb               1  ----------------------------AEYVRALFDFNGNDEEDLPFKKGDILRIRDK-   31
1cska.pdb               1  ----------------------------GTECIAKYNFHGTAEQDLPFCKGDVLTIVAV-   31
1gbra.pdb               1  ---------GSRRAS-----V--G----SMEAIAKYDFKATADDELSFKRGDILKVLNE-   39
1gria1.pdb              1  -----------------------------MEAIAKYDFKATADDELSFKRGDILKV----   27
1gria2.pdb              1  -----------------------Q----PTYVQALFDFDPQEDGELGFRRGDFIHVMDN-   32
1lcka.pdb               1  ----------------------------DNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-   31
1pht.pdb                1  --------------------A--E----GYQYRALYDYKKEREEDIDLHLGDILTVNK--   32
1qcfa.pdb               1  ---S----------------G--I----RIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-   34
1qlya.pdb               1  ----------------------------LKKVVALYDYMPMNANDLQLRKGDEYFILEE-   31
1sema.pdb               1  -----------------------E----TKFVQALFDFNPQESGELAFKRGDVITLINK-   32
1shfa.pdb               1  ----------------------------VTLFVALYDYEARTEDDLSFHKGEKFQILNS-   31
1shg.pdb                1  ----------------------------KELVLALYDYQEKSPREVTMKKGDILTLLNS-   31
1ycsb.pdb               1  ---------------------IMN----KGVIYALWDYEPQNDDELPMKEGDCMTIIHR-   34
2hsp.pdb                1  GSP------------T-------F----KCAVKALFDYKAQREDELTFIKSAIIQNVEK-   36
2src.pdb                1  -----------------------------TTFVALYDYESRTETDLSFKKGERLQIVNN-   30
                                                            a                          

1aoja.pdb              33  R---------------Q--------WWKVRN-A-SG--------DSGF-VPNNILDIMRT   58
1ark.pdb               33  --------A------I---D---EGWMYGTVQR-TG--------RTGM-LPANYVEAI--   60
1awj.pdb               51  ---------------S---E---IHWWRVQD-K-NG--------HEGY-APSSYLVEKS-   77
1bb9.pdb               43  QNPE----E------Q---D---EGWLMGVKES-DWNQHKELEKCRGV-FPENFTERVQ-   83
1bbza.pdb              31  ---------------N---H--NGEWCEAQT---KN--------GQGW-VPSNYITPVNS   58
1ckaa.pdb              32  ---------------P---E---EQWWNAED-S-E---------GKRGMIPVPYVEK---   56
1cska.pdb              32  ---------------TK--D---PNWYKAKN-K-V---------GREGIIPANYVQK---   57
1gbra.pdb              40  ---------------EC--D---QNWYKAEL-N-G---------KDGF-IPKNYIEMKP-   66
1gria1.pdb             28  -----------------------QNWYKAEL-N-G---------KDGF-IPKNYIEMK--   50
1gria2.pdb             33  ---------------S---D---PNWWKGAC-H--G--------QTGM-FPRNYVTPVN-   58
1lcka.pdb              32  ---------------S-------GEWWKAQSLT-TG--------QEGF-IPFNFV-----   54
1pht.pdb               33  G-S-LVALGFSDGQEA---RPEEIGWLNGYNET-TG--------ERGD-FPGTYVEYIG-   76
1qcfa.pdb              35  ---------------S-------GEWWKARSLA-TR--------KEGY-IPSNYVARVDS   62
1qlya.pdb              32  ---------------S---N---LPWWRARD-K-NG--------QEGY-IPSNYVTE---   56
1sema.pdb              33  ---------------D---D---PNWWEGQL-N--N--------RRGI-FPSNYVCPYN-   58
1shfa.pdb              32  ---------------S---E---GDWWEARSLT-TG--------ETGY-IPSNYVAPVD-   59
1shg.pdb               32  ---------------T---N---KDWWKVEV-N--D--------RQGF-VPAAYVKKLD-   57
1ycsb.pdb              35  ---------------EDEDE---IEWWWARL-N--D--------KEGY-VPRNLLGLY--   62
2hsp.pdb               37  ---------------Q---E---GGWWRGDY-GGK---------KQLW-FPSNYVEEMV-   63
2src.pdb               31  ---------------T---E---GDWWLAHSLS-TG--------QTGY-IPSNYVAPSDS   59
                                                    W                        P         

1aoja.pdb              59  ------PE-----------   60
1ark.pdb                   -------------------     
1awj.pdb                   -------------------     
1bb9.pdb                   -------------------     
1bbza.pdb                  -------------------     
1ckaa.pdb                  -------------------     
1cska.pdb                  -------------------     
1gbra.pdb              67  --HPE-F-I-VTD------   74
1gria1.pdb                 -------------------     
1gria2.pdb             59  --R--NV------------   61
1lcka.pdb                  -------------------     
1pht.pdb               77  RKKIS-P-P----------   83
1qcfa.pdb              63  -------------LET---   65
1qlya.pdb              57  ----------------AE-   58
1sema.pdb                  -------------------     
1shfa.pdb                  -------------------     
1shg.pdb                   -------------------     
1ycsb.pdb              63  ------------------P   63
2hsp.pdb               64  NPEGI-H-RD---------   71
2src.pdb               60  -------------IQA---   62
                                              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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