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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 20:28:04 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/sodfe.html
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#====================================
# Aligned_structures: 8
#   1: 1abma.pdb
#   2: 1ar5a.pdb
#   3: 1idsa.pdb
#   4: 1isaa.pdb
#   5: 1mmma.pdb
#   6: 1sssa.pdb
#   7: 3mdsa.pdb
#   8: 3sdpa.pdb
#
# Length:        253
# Identity:       21/253 (  8.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     43/253 ( 17.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           95/253 ( 37.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1abma.pdb               1  -----KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTE---EKYQEALAKG   52
1ar5a.pdb               1  ----AVYTLPELPYDYSALEPYISGEIMELHHDKHHKAYVDGANTAL---DKLAEARDKA   53
1idsa.pdb               1  ----AEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAV---AKLEEARAKE   53
1isaa.pdb               1  -----SFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLI---KG--------   44
1mmma.pdb               1  -----SYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAAL---ESL-------   45
1sssa.pdb               1  IQF-KKYELPPLPYKIDALEPYISKDIIDVHYNGHHKGYVNGANSLL---ERLEKVVKG-   55
3mdsa.pdb               1  ---PYPFKLPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAAL---EKY-------   47
3sdpa.pdb               1  -------PPLPYAH-D-ALQPHISKETLEYHHDKH----HNTYVVNLNNLVPGT------   41
                                   lp l     AL P i       H  kH    v   n                

1abma.pdb              53  DV------T-------------A-QIA-----------LQPALKFNGGGHINHSIFWTNL   81
1ar5a.pdb              54  DF------G-------------A-INK-----------LEKDLAFNLAGHVNHSVFWKNM   82
1idsa.pdb              54  DH------S-------------A-ILL-----------NEKNLAFNLAGHVNHTIWWKNL   82
1isaa.pdb              45  -TA-F---------------------EGKSLEEIIRSS-EGGVFNNAAQVWNHTFYWNCL   80
1mmma.pdb              46  --PEF----ANLPVEELITKLDQLPAD-----------KKTVLRNNAGGHANHSLFWKGL   88
1sssa.pdb              56  DL--QTGQY-------------D-IQG-----------IIRGLTFNINGHKLHALYWENM   88
3mdsa.pdb              48  --PYL----HGVEVEVLLRHLAALPQD-----------IQTAVRNNGGGHLNHSLFWRLL   90
3sdpa.pdb              42  -PE-F---------------------EGKTLEEIVKSS-SGGIFNNAAQVWNHTFYWNCL   77
                                                                        N     nH   W   

1abma.pdb              82  SPN-GG-GEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAA  139
1ar5a.pdb              83  APKGSAPERPTDELGAAIDEFFGSFDNMKAQFTAAATGIQGSGWASLVWDPLGKRINTLQ  142
1idsa.pdb              83  SPN-GG-DKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQ  140
1isaa.pdb              81  APN-AG-GEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNS-DGKLAIVS  137
1mmma.pdb              89  KKG----TTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKG-D-KLAVVS  142
1sssa.pdb              89  APSGKGGGKPGGALADLINKQYGSFDRFKQVFTETANSLPGTGWAVLYYDTESGNLQIMT  148
3mdsa.pdb              91  TPG-GA-KEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLVKDP-FGKLHVLS  147
3sdpa.pdb              78  SPD-AG-GQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWAWLVKA--D-GSLALC  132
                            p       p g l  aI   fGsf   k           GsGW  L             

1abma.pdb             140  CP-NQDPLQGT----T------GLIPLLGIDVWEHAYYLQYKNVRPDYLKAI-WNVINWE  187
1ar5a.pdb             143  FY-DHQ-----NNLPA------GSIPLLQLDMWEHAFYLQYKNVKGDYVKSW-WNVVNWD  189
1idsa.pdb             141  VY-DHQ-----TNFPL------GIVPLLLLDMWEHAFYLQYKNVKVDFAKAF-WNVVNWA  187
1isaa.pdb             138  TS-NAGTPL-T----T------DATPLLTVDVWEHAYYIDYRNARPGYLEHF-WALVNWE  184
1mmma.pdb             143  TA-NQDSPL-M----GEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEF-WNVVNWD  195
1sssa.pdb             149  FE-NHF-----QNHIA------EIPIILILDEFEHAYYLQYKNKRADYVNAW-WNVVNWD  195
3mdsa.pdb             148  TP-NQDNPV-M----E------GFTPIVGIDVWEHAYYLKYQNRRADYLQAI-WNVLNWD  194
3sdpa.pdb             133  STIGAGAPL-T----S------GDTPLLTCDVWEHAY-YIDYRNLRPKYVEAFWNLVNWA  180
                                                    p    D wEHA      n          Wn  NW 

1abma.pdb             188  NVTERYMA-CKK-  198
1ar5a.pdb             190  DVALRFSE-ARVA  201
1idsa.pdb             188  DVQSRYAA-ATS-  198
1isaa.pdb             185  FVAKNLAA-----  192
1mmma.pdb             196  EAAARFAA-KK--  205
1sssa.pdb             196  AAEKKLQK-YL--  205
3mdsa.pdb             195  VAEEFFKK-A---  203
3sdpa.pdb             181  FVAEE---G----  186
                                        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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