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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:25:52 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/tRNA-synt_1.html
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#====================================
# Aligned_structures: 3
#   1: 1a8h.pdb
#   2: 1ile.pdb
#   3: 1qu2a.pdb
#
# Length:        811
# Identity:       52/811 (  6.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    222/811 ( 27.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          360/811 ( 44.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a8h.pdb                1  ----------------------------------------------MEKVFYVTTPIYYV   14
1ile.pdb                1  --------MFKE---VGEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTA   49
1qu2a.pdb               1  MDYEKTLL-MPKTDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYA   59
                                                                         g   f v  gppya

1a8h.pdb               15  NAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGE---------   65
1ile.pdb               50  NGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKK--LGLKSKREI  107
1qu2a.pdb              60  NGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKK--G-VD----R  112
                           Ng pH GHA     kDf  Ryktm Gyyap   GwDtHGlpve a  kk           

1a8h.pdb               66  ----------DPKAFVDRVSGRFKRAWDLLGIAYDD--FIRTTEERHKKVVQLVLKKVYE  113
1ile.pdb              108  EAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFD  167
1qu2a.pdb             113  KKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMAD  172
                                      ckefv       k    rlg   D    y Tlep y       lk   d

1a8h.pdb              114  AGDIYYGEYEGLYCVSCERFYTEKEL--VEGLCPIHGRP--VERRKEGNYFFRMEKYRPW  169
1ile.pdb              168  RGLLYRDHKVVPYCPRCGTPLSSHEVALGYPHCWRCS--TPLMYYATESWFIKNTLFKDE  225
1qu2a.pdb             173  KGLIYKGKKPVYWSPSSESSLAEAEI--EYPHDWRTKKP--VIFRATPQWFASISKVRQD  228
                            GliY g k v ycpsce  l e E    yphcwr      v  rat  wF    k r  

1a8h.pdb              170  LQEYIQENPDLIRPEGYRN-EVLAMLAEPIGDLSISRPKSRVPWGIPLPWD---------  219
1ile.pdb              226  LIRNNQEI--HWVPPHIKEGRYGEWLKNLVDWAL-SRNR---YWGTPLPI-WVCQACG-K  277
1qu2a.pdb             229  ILDAIENT--NFKVNWGKT-RIYNMVRDRGEWVI-SRQR---VWGVPLPV-FYA--ENGE  278
                           l   iqe      p   k  r   ml     w   SR r    WG PLP           

1a8h.pdb                   ------------------------------------------------------------     
1ile.pdb              278  EEAI-------GSFQELKAR-ATKPLPEPFDPHRPYVDQVEL--------ACAC-G-GTM  319
1qu2a.pdb             279  IIMTKETVNHV-ADLFAEHGS-------------NIWFEREAKDLLPEGFTHPGSPNGTF  324
                                                                                       

1a8h.pdb              220  --ENHVTYVWFDALLNYVSALDYPEGE--AYRTFWPHAWHLIGKDILKPHAVFWPTMLKA  275
1ile.pdb              320  RRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVM  379
1qu2a.pdb             325  TKETDIMDVWFDSGSSHRGVL--ETRP--EL--SFPADMYLEGSDQYRGWFNSSITTSVA  378
                             e  v dVWfDsg      L  p         sfPad  leG Dq rgwfns  t  va

1a8h.pdb              276  AG-IPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDT  334
1ile.pdb              380  LFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADR  439
1qu2a.pdb             379  TRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDY-LADV  437
                                 yk l  hGf ld  G KMSKslGNVvdP     k GaDalR y     p  aD 

1a8h.pdb              335  PV-SEEALRTRYE----ADL---ADDLGNLVQRTRAMLFRFAE----GRIPEPV-AGEEL  381
1ile.pdb              440  RFGP---------NLVRETVRDYFLTLWNVYSFFVTYANLDR-PDL-KNPPPPEKRPEMD  488
1qu2a.pdb             438  RI-S---------DEILKQTSDDYRKIRNTLRFMLGNIND---FNPDTDSIPESELLEVD  484
                           r  s                      l N   f     n           ppp    E d

1a8h.pdb              382  ----AEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNR--YINEKK-PWELFK-KEPEE  433
1ile.pdb              489  RWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNE-D-ALD  546
1qu2a.pdb             485  RYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRD-SHI  543
                               ar   l  r     e  d      e   fv   ls  Y    k        d    

1a8h.pdb              434  ARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGL-----------KEEVRLE------  476
1ile.pdb              547  REAAYATLYEALVLVATLAAPFTPFLAEVLWQNLV-RSVRLE-AKESVHLADWPEADPAL  604
1qu2a.pdb             544  RRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTP------HVKEESVHLADMPKVVEV-  596
                           rra    lye Lv    LlaP  p  aeelw  l             vhlad p      

1a8h.pdb              477  ----EAERWGLAEPRPIPEEAPVLFPKK--------------------------------  500
1ile.pdb              605  ADEALVAQM-------------------RAVLKVVDLARAAR------------------  627
1qu2a.pdb             597  -DQALLDKW-------------------RTFMNLRDDVNRALETARNEKVIGKSLEAKVT  636
                               l   w                                                   

1a8h.pdb                   ------------------------------------------------------------     
1ile.pdb                   ------------------------------------------------------------     
1qu2a.pdb             637  IASNDKFNASEFLTSFDALHQLFIVSQVKVVDKLDDQATAYEHGDIVIEHADGEKCERCW  696
                                                                                       

1a8h.pdb                   -------------------------------     
1ile.pdb              628  ------------------AKSG--------V  632
1qu2a.pdb             697  NYSEDLGAVDELTHLCPR---CQQVVKSLV-  723
                                                          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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