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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:48:09 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/tRNA-synt_1b.html
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#====================================
# Aligned_structures: 2
#   1: 1d2ra.pdb
#   2: 2ts1.pdb
#
# Length:        389
# Identity:       26/389 (  6.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     26/389 (  6.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          135/389 ( 34.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1d2ra.pdb               1  -----------------------------MKTIFSGIQPSG-VITIGNY---IGALRQFV   27
2ts1.pdb                1  MDLLAELQWRGLVNQTTDEDGLRKLLNEERVTLYCGFDPTADSLH----IGHLATILTMR   56
                                                          T   G  P                     

1d2ra.pdb              28  ELQH-EYNCYFCIVDQHAIT----------VWQDPHELRQNIRRLAALYLAVGIDPT---   73
2ts1.pdb               57  RFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGR-FLDFEADG  115
                             Q                                        R          D     

1d2ra.pdb              74  -QATLFIQSEV---PAHAQAAWMLQCIVYIGELERMTQFKEKSAGAAAAAAGLLTYPPLM  129
2ts1.pdb              116  NPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETG--ISFTEFSYMMLQ  173
                             A                                                    Y  L 

1d2ra.pdb             130  AADILLY----NTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMS  185
2ts1.pdb              174  AYDFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKG-------RAFGLTIPL---VTK  223
                           A D L             G DQ   I     L                            

1d2ra.pdb             186  LVDPTKKMSKSDPNPKAYIT-LL--DDAKTIEKKIKSAVTDSEGTIRYDKEAKPGISNLL  242
2ts1.pdb              224  ADG----TKFGKTE-SGTIWLDKEKTSPYEFYQFWINTD----------------DRDVI  262
                                             I                                         

1d2ra.pdb             243  NIYSTLSGQSIEELERQYE---GKGY--GVFKADLAQVVIETLRPIQERYHHWMESEELD  297
2ts1.pdb              263  RYLKYFTFLSKEEIEALEQELREAP-EKRAAQKTLAEEVTKLVH----G-EEALRQ----  312
                                    S EE E                   LA  V                     

1d2ra.pdb             298  RVLDEGAEKANRVASEMVRKMEQAMGLGR  326
2ts1.pdb              313  -------------AIRIS-----------  317
                                        A               


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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