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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:49:56 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/tRNA-synt_1c.html
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#====================================
# Aligned_structures: 2
#   1: 1gln.pdb
#   2: 1qtqa.pdb
#
# Length:        385
# Identity:       62/385 ( 16.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     62/385 ( 16.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          118/385 ( 30.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1gln.pdb                1  ------------------MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIED   42
1qtqa.pdb               1  TNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDD   60
                                              V TR  P P G  H G A     N   A    G    R  D

1gln.pdb               43  TDRARYVPGAEERILAALKWLGLSYDEGPDVAAPTGPYRQSERLPLYQKYAEELLKRGWA  102
1qtqa.pdb              61  TNPVKEDIEYVESIKNDVEWLGFHWSG---N-----VRYSSDYFDQLHAYAIELINKGLA  112
                           T          E I     WLG                  S        YA EL   G A

1gln.pdb              103  YRAFETPEELEQIRKEK-----GGYDGRARNIPPEEAEERARRGE--------PHVIRLK  149
1qtqa.pdb             113  YVDELTPEQIREYR-G-TLTQPGKN-SPYRDRSVEENLALFEKM-RAGGFEEGKACLRAK  168
                           Y    TPE     R        G      R    EE                     R K

1gln.pdb              150  VPRPGTTEVKDELRGVVVYDNQEIPDVVLLKS-------------DGYPTYHLANVVDDH  196
1qtqa.pdb             169  IDMASPF-------------IV-MRDPVLYR-IKFAEHHQTGNKWCIYPMYDFTHCISDA  213
                                                    D VL                  YP Y       D 

1gln.pdb              197  LMGVTDVIRAEEWLVSTPIHVLLYRAFGW-EAPRFYHMPLLRNPDKTKISKRKS------  249
1qtqa.pdb             214  LEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVM-SKRKLNLLVTD  272
                           L G T      E                    PR Y    L        SKRK       

1gln.pdb              250  ----------HTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAFTWERVS  299
1qtqa.pdb             273  KHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIG-V-----------------------  308
                                               G      R      G                         

1gln.pdb              300  L-G-GPVFDLEKLRWMNGKYIREV-  321
1qtqa.pdb             309  -TKQDNTIEMASLESCIREDLNE-N  331
                                       L         E  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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