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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:50:54 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/tRNA-synt_1d.html
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#====================================
# Aligned_structures: 2
#   1: 1f7ua.pdb
#   2: 1iq0a.pdb
#
# Length:        668
# Identity:      125/668 ( 18.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    125/668 ( 18.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          142/668 ( 21.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f7ua.pdb               1  ASTANMISQLKKLSIAEPAVAKDSHPDVNIVDLMRNYISQELSKISGVDSSLIFP----A   56
1iq0a.pdb               1  ----------------------------MLRRALEEAIAQALKEMG-V-------PVRLK   24
                                                                I Q L     V            

1f7ua.pdb              57  LEWTNTMERGDLLIPIPR-LRIKGANPKDLAVQWAEKFPCGDFLEKVEANGPFIQFFFNP  115
1iq0a.pdb              25  VARAPKDKPGDYGVPLFALAKELRKPPQAIAQELKDRLPLPEFVEEAVPVGGYLNFRLRT   84
                                    GD   P           P   A       P   F E     G    F    

1f7ua.pdb             116  QFLAKLVIPDILTRKEDY-GSCKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANL  174
1iq0a.pdb              85  EALLREALRP--------KAPFPRRPGVV-LVEHTSVNPNKELHVGHLRNIALGDAIARI  135
                             L                             E  S N  K  H GHLR    G   A  

1f7ua.pdb             175  YEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEA----LVKDPIHHLFDVYVRINKDI  230
1iq0a.pdb             136  LAYAGREVLVLNYIDDTGRQAAETLFALRHYG----LTWDGKEKYDHFAGRAYVRLHQD-  190
                               G EV   NY  D G Q          YG              H     YVR   D 

1f7ua.pdb             231  EEE-GDSIPLEQSTNGKAREYFKRMEDGDEEALKI-WKRFREFSIEKYIDTYARLNIKYD  288
1iq0a.pdb             191  --PEYE------RLQPAIEEVLHALERG-------ELREEVNRILLAQMATMHALNARYD  235
                                              E     E G                      T   LN  YD

1f7ua.pdb             289  VYSGESQVSK---ESMLKAIDLFKEKGLTHE------DKGAVLIDLTKFNKKL--GKAIV  337
1iq0a.pdb             236  LLVWESDI--VRAGLLQKALALLEQSPHVFRPREGKYA-GALVMDASPVIPGLEDPFFVL  292
                               ES           KA  L                 GA   D       L       

1f7ua.pdb             338  QKSDGTTLYLTRDVGAAMDRYE----------------------------KYHFDKMIYV  369
1iq0a.pdb             293  LRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEETINV  352
                             S GT  Y   D                                            I V

1f7ua.pdb             370  IASQQDLHAAQFFEILKQMGF-EWAKDLQHVNFGMVQ-G-MSTRKGTVVFLDNILEETKE  426
1iq0a.pdb             353  VDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSG--AVSVDEVLEEATR  410
                               Q    A     L   G    A    H     V            V  D  LEE   

1f7ua.pdb             427  KMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGP  486
1iq0a.pdb             411  RARAIVEEK---NPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFEGDTGP  467
                                              EE A  V   A               F     LSFEGDTGP

1f7ua.pdb             487  YLQYAHSRLRSVERNASGITQEKWI-NADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHE  545
1iq0a.pdb             468  YVQYAHARAHSILRKAGEW------GAPDLSQA-TPYERALALDLLDFEEAVLEAAEERT  520
                           Y QYAH R  S  R A            D S    P    L   L         A     

1f7ua.pdb             546  PTTVVTYLFKLTHQVSSCYDV-------LWVAGQTEELATARLALYGAARQVLYNGMRLL  598
1iq0a.pdb             521  PHVLAQYLLDLAASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLL  580
                           P     YL  L       Y           V    E L   RL L       L  G  LL

1f7ua.pdb             599  GLTPVERM  606
1iq0a.pdb             581  GIPAPEVM  588
                           G    E M


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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