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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:25:32 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/tRNA_bind.html
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#====================================
# Aligned_structures: 3
#   1: 1b7yb.pdb
#   2: 1fl0a.pdb
#   3: 1gd7a.pdb
#
# Length:        139
# Identity:        8/139 (  5.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     44/139 ( 31.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           52/139 ( 37.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b7yb.pdb               1  ----FPIP-R--GVVFARVLEAHPIPG--TRLKRLVLDAG--RTVEVVSGAE-N----AR   44
1fl0a.pdb               1  ------IDVSRLDLRIGCIITARKHPDA-DSLYVEEVDVGEIAPRTVVSGLVNHVPLEQM   53
1gd7a.pdb               1  MTPL--EAFQILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDL   58
                                 i     dlr grvl A php     ly l vD G      vvsg          

1b7yb.pdb              45  KGIGVALALPGTELPGLGQK-VGERVIQGVRSFGMALSPRELGVGEYG------GGLLEF   97
1fl0a.pdb              54  QNRMVILLC-----------NLKPAKMRGVLSQAMVMCAS--------S--PEKIEILAP   92
1gd7a.pdb              59  VGRLVVCAV-----------NLGAKRVAGFLSEVLVLGVP--------DEA-GRVVLLAP   98
                            gr V la             lg     GvlS  mvl                   lLap

1b7yb.pdb              98  PEDALPPGTPLSEAWP---  113
1fl0a.pdb              93  PNG-SVPGDRIT----FDA  106
1gd7a.pdb              99  DRE-VPLGGKVF-------  109
                           p    ppG           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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