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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 09:29:10 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/tbpc.html
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#====================================
# Aligned_structures: 4
#   1: 1aisa.pdb
#   2: 1cdwa.pdb
#   3: 1voka.pdb
#   4: 1ytba.pdb
#
# Length:        197
# Identity:       62/197 ( 31.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    141/197 ( 71.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           21/197 ( 10.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1aisa.pdb               1  ------------MVDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIIC   48
1cdwa.pdb               1  ----------------SGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM   44
1voka.pdb               1  EGSNPVDLSKHP----SGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIM   56
1ytba.pdb               1  ----------------SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIM   44
                                           Sgivp lqNIV tV L c LDLk  al arNaeYNPkrFaavIm

1aisa.pdb              49  HLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFS  108
1cdwa.pdb              45  RIREPRTTALIFSSGKMVCTGAKSEENSRLAARKYARVVQKLGFPAKFLD-FKIQNMVGS  103
1voka.pdb              57  RIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKD-FKIQNIVGS  115
1ytba.pdb              45  RIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTD-FKIQNIVGS  103
                           rirePkttaLIF SGKmV TGAKSe  s  A rKyAr  qk Gf aKf d fkiQN VgS

1aisa.pdb             109  GDIGREFNLDVVALTL-PNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADA  167
1cdwa.pdb             104  CDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI  163
1voka.pdb             116  CDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDET  175
1ytba.pdb             104  CDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEI  163
                           cDvkfpirLegla  h  fssYEPElFPGlIYRm  PkiVlLiFvSGKiV tGAK r e 

1aisa.pdb             168  WEAVRKLLRELDKY---  181
1cdwa.pdb             164  YEAFENIYPILKGFRK-  179
1voka.pdb             176  YKAFENIYPVLSEFRKI  192
1ytba.pdb             164  YQAFEAIYPVLSEFRKM  180
                           y Afe iyp L  f   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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