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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sun Jul 24 05:41:28 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/toxin.html
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#====================================
# Aligned_structures: 20
# 1: 1cdta.pdb
# 2: 1cod.pdb
# 3: 1drs.pdb
# 4: 1fas.pdb
# 5: 1kbt.pdb
# 6: 1kxia.pdb
# 7: 1lsi.pdb
# 8: 1nean.pdb
# 9: 1nor.pdb
# 10: 1ntn.pdb
# 11: 1ntx.pdb
# 12: 1nxb.pdb
# 13: 1tfs.pdb
# 14: 1tgxa.pdb
# 15: 1txb.pdb
# 16: 2abxa.pdb
# 17: 2cdx.pdb
# 18: 2crt.pdb
# 19: 2ctx.pdb
# 20: 2nbta.pdb
#
# Length: 111
# Identity: 6/111 ( 5.4%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 8/111 ( 7.2%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 75/111 ( 67.6%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1cdta.pdb 1 ---L----KCNK-LI----P-I---AY--KTCPE-GKNLCYKMML-ASK---K--M---- 31
1cod.pdb 1 ---L----ECHN-QQSS--QTP---TT--TGCSG-GETNCYKKRWRDH-----RG----- 34
1drs.pdb 1 ---R----ICYN-HLGT--KPP---TT--ETC---QEDSCYKNIW-TF--D--------- 30
1fas.pdb 1 ---T---M-CYS-HT----T-TSRAIL--TNCG---ENSCYRKSR-RHP---P--K---- 32
1kbt.pdb 1 R-------KCNK-LV----P-L---FY--KTCPA-GKNLCYKMFM-VSN---L--T---- 31
1kxia.pdb 1 ---L----KCHNTQL----P-F---IY--KTCPE-GKNLCFKATL-KKF--PL--K---- 33
1lsi.pdb 1 --R-----E-C-YLN---P--H---DT--QTCPS-GQEICYVKSWCNA-----WC--SSR 33
1nean.pdb 1 ---L----ECHN-QQSS--QPP---TT--KTCP--GETNCYKKVWRDH-----RG----- 33
1nor.pdb 1 ---L----ECHN-QQSS--QPP---TT--KTCS--GETNCYKKWWSDH-----RG----- 33
1ntn.pdb 1 ---I----TCY-KTP---I--I---TS--ETCAP-GQNLCYTKTWCDA-----WC--GSR 34
1ntx.pdb 1 ---R----ICYN-HQST--TRA---TT--KSC---EENSCYKKYW-RD---H-RG----- 32
1nxb.pdb 1 ---R----ICFN-QHSS--QPQ---TT--KTCSP-GESSCYHKQW-SD---F-RG----- 34
1tfs.pdb 1 ---R----ICYS-HKAS--LPR---AT--KTC---VENTCYKMFI-RTHRE--------- 32
1tgxa.pdb 1 ---L---K-CNQ-LI----P-P---FW--KTCPK-GKNLCYKMTM-RAA-----PM---- 31
1txb.pdb 1 -------T-K-----CYVT--PD--ATSQ-TCPDG-QDICYTKTWCDG-----FC-SSR- 34
2abxa.pdb 1 ----IVCH-TTA--TIPSS--A-------VTCPPG-ENLCYRKMWCDA-----FC-SSR- 36
2cdx.pdb 1 ---L----KCNK-LI----P-I---AS--KTCPA-GKNLCYKMFM-MSD-----LT---- 31
2crt.pdb 1 L-------KCNK-LV----P-L---FY--KTCPA-GKNLCYKMFM-VAT---P--K---- 31
2ctx.pdb 1 ---I---R-CFI-----TPD-G----T--SKDC-PNGHVCYTKTWCDG-----FC--SIR 33
2nbta.pdb 1 -RT------CL--IS---PS-S---TP--QTCPN-GQDICFLKAQCDK-----FC--SIR 34
c C
1cdta.pdb 32 VP-VKRGCINVC-PKN--SAL-VKYVCCST-DRC-N--------------- 60
1cod.pdb 35 Y-RTERGCG-CP-SVK---NG-IEINCCTT-DRC-N--N------------ 62
1drs.pdb 31 N-IIRRGCG--CFTPR--GDM-PGPYCCES-DKC-N--L------------ 59
1fas.pdb 33 MV-LGRGCG-CP-PGD---DY-LEVKCCTSPDKC-NY-------------- 61
1kbt.pdb 32 VP-VKRGCIDVC-PKN--SAL-VKYVCCNT-DRCN---------------- 60
1kxia.pdb 34 FP-VKRGCADNC-PKN--SAL-LKYVCCST-DKC-N--------------- 62
1lsi.pdb 34 GKVLEFGCAATC-PSV--NTG-TEIKCCSA-DKC---NTY-P--------- 66
1nean.pdb 34 T-IIERGCG-CP-TVK---PG-IKLNCCTT-DKC-N--N------------ 61
1nor.pdb 34 T-IIERGCG-CP-KVK---PG-VNLNCCRT-DRC-N--N------------ 61
1ntn.pdb 35 GKVIELGCAATC-PTV--ESY-QDIKCCST-DNC---NPH-PK--QKRP-- 72
1ntx.pdb 33 T-IIERGCG--C-PKV--KPG-VGIHCCQS-DKC-N--Y------------ 60
1nxb.pdb 35 T-IIERGCG--C-PTV--KPG-IKLSCCES-EVC-N--N------------ 62
1tfs.pdb 33 Y-ISERGCG--C-PTA--MWP-YQTECCKG-DRC-N--K------------ 60
1tgxa.pdb 32 VP-VKRGCIDVC-PKS--SLL-IKYMCCNT-DKC-N--------------- 60
1txb.pdb 35 GKRIDLGCAATC--PKVK-PG-VDIKCCST-DNC-NP---F-P--TWKRKH 73
2abxa.pdb 37 GKVVELGCAATC-PS--KKPY-EEVTCCST-DKC-NH--PP-K--RQPG-- 74
2cdx.pdb 32 IP-VKRGCIDVC-PKN--SLL-VKYVCCNT-DRC-N--------------- 60
2crt.pdb 32 VP-VKRGCIDVC-PKS--SLL-VKYVCCNT-DRC-N--------------- 60
2ctx.pdb 34 GKRVDLGCAATC-PTV--KTG-VDIQCCST-DNC-NP--FP-TGG----AP 71
2nbta.pdb 35 GPVIEQGCVATC-PQF--RSNYRSLLCCTT-DNC-NH-------------- 66
GC CC d C
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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