################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:24:26 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/transket_pyr.html
################################################################################################
#====================================
# Aligned_structures: 3
#   1: 1dtwb.pdb
#   2: 1qs0b.pdb
#   3: 1trka.pdb
#
# Length:        250
# Identity:       11/250 (  4.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     89/250 ( 35.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          103/250 ( 41.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dtwb.pdb               1  ----Q--------------TQ-KMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRC   40
1qs0b.pdb               1  ATTT---------------------TIQALRSA-D-VLERDDNVVVYGQDVGYFGGVFRC   37
1trka.pdb               1  -----LPANWESKLPTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLT-PS--NLT   52
                                                    t q   sa d vl  dp  v  g Dv  fg  frc

1dtwb.pdb              41  TVGLR----------DKYGK-DRVFNTPLCEQGIVGFGIGIAV-T-GATAIAEIQFADY-   86
1qs0b.pdb              38  TEGLQ----------TKYGK-SRVFDAPISESGIVGTAVG-GA-Y-GLRPVVEIQFADY-   82
1trka.pdb              53  RWK--EALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNGISAFGANYKPYGGT-----F  105
                           t g             kygk  Rvf  pi E givg   G  a   g  p  ei      

1dtwb.pdb              87  ---IFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWG-CVG--HGALYHSQS-PEAFFA  139
1qs0b.pdb              83  ---FYPASDQIVSE-ARLRYRSAGEFIAPL-TLR-PCG-GGI--YGGQTHSQS-PEA-FT  131
1trka.pdb             106  LNFVSYAAGAVRLS-ALSG---------HPVIWVATHDSIG-VGEDGPTHQPIETLAHFR  154
                                pA dqiv e A  r            t r p g  g    gg tHsqs peA F 

1dtwb.pdb             140  HCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKI-LYRA-AA---------------  182
1qs0b.pdb             132  QVCGLRTV-PSNPYDAKGLLIASIECDDPVIFLEPKR-LYNGP-FDGHHDRPVTPWSKHP  188
1trka.pdb             155  SLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQN-----L---------------  194
                             pgi vv P  p  akgll  siE k p if epkr l                     

1dtwb.pdb             183  -EEVP--IE-  188
1qs0b.pdb             189  HSAVPDG---  195
1trka.pdb             195  -PQ------L  197
                                     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################