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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:57:12 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/trp_syntA.html
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#====================================
# Aligned_structures: 2
#   1: 1geqa.pdb
#   2: 1qopa.pdb
#
# Length:        272
# Identity:       77/272 ( 28.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     77/272 ( 28.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           38/272 ( 14.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1geqa.pdb               1  MFK---------------DGSLIPYLTAGDPDKQSTLNFLLALDE-YAGAIELGIPFSDP   44
1qopa.pdb               1  ---MERYENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDP   57
                                              G   P  T GDP     L     L    A A ELG PFSDP

1geqa.pdb              45  IADGKTIQESHYRALKNGFKLREAFWIVKEFRRHS-STPIVLMTYYNPIYRAGVRNFLAE  103
1qopa.pdb              58  LADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYAR  117
                            ADG TIQ    RA   G      F      R      PI L  Y N     G   F A 

1geqa.pdb             104  AKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLV  163
1qopa.pdb             118  CEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLL  177
                               GVD  LV D PV     F   A    I   F   PN  D  L        G  YL 

1geqa.pdb             164  SLYEIPK---------TAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGS  214
1qopa.pdb             178  SRS----GVTGAENRGPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGS  233
                           S                   L    K         GFG S  E V      GA G   GS

1geqa.pdb             215  ALVKIIGEKG--R-EATEFLKKKVEELLGI--  241
1qopa.pdb             234  AIVKIIEKNLASPKQMLAELRSFVSAMKAASR  265
                           A VKII             L   V        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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