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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:41:25 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/tryp_alpha_amyl.html
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#====================================
# Aligned_structures: 3
#   1: 1b1u.pdb
#   2: 1bea.pdb
#   3: 1hssa.pdb
#
# Length:        133
# Identity:       27/133 ( 20.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     75/133 ( 56.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           37/133 ( 27.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b1u.pdb                1  GTSCIPGMAIPHNPLDSCRWYVSTRTCG-VGPRLATQEMKARCCRQLEAIPAYCRCEAVR   59
1bea.pdb                1  --SCVPGWAIPHNPLPSCRWYVTSRTCG-IGPRLPWPELKRRCCRELADIPAYCRCTALS   57
1hssa.pdb               1  --MCYPGQAFQVPALPACRPLLRLQCNGSQV----PEAVLRDCCQQLAHISEWCRCGALY   54
                             sC PG AiphnpLpsCRwyv  rtcG  g      e krrCCrqLa IpayCRC Al 

1b1u.pdb               60  ILMDG---VVTPS--GQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIH-----GG  109
1bea.pdb               58  ILMDG---AIPPGPDAQLEG-RLEDLPGCPREVQRGFAATLVTEAECNLATIS-----GV  108
1hssa.pdb              55  SMLDSMYK----------EHGA---FPRCRREVVKLTAASITA--VCRLPIVVDASGDGA   99
                           ilmDg             Eg     lPgCpReVqr fAa lvt  eCnLati      G 

1b1u.pdb              110  PFCLSLL-----G  117
1bea.pdb              109  AECPWIL-----G  116
1hssa.pdb             100  YVCKDVAAYPDA-  111
                             C   l      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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