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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 17:01:22 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/uce.html
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#====================================
# Aligned_structures: 6
#   1: 1a3s.pdb
#   2: 1ayza.pdb
#   3: 1e2ca.pdb
#   4: 2aak.pdb
#   5: 2uce.pdb
#   6: 2ucz.pdb
#
# Length:        180
# Identity:       19/180 ( 10.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     46/180 ( 25.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           35/180 ( 19.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a3s.pdb                1  -------MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGT-MNLMNWECAIPGKKGTP   52
1ayza.pdb               1  -------S-TPARRRLMRDFKRMKEDAPPGVSASPLP------DNVMVWNAMIIGPADTP   46
1e2ca.pdb               1  MTTSKERH--SVSKRLQQELRTLLMSGDPGITAFPDG------DNLFKWVATLDGPKDTV   52
2aak.pdb                1  ------MS-TPARKRLMRDFKRLQQDPPAGISGAPQD------NNIMLWNAVIFGPDDTP   47
2uce.pdb                1  -------M-SSSKRIAKELSDLE-RDPPTSCSAGPVG------DDLYHWQASIMGPADSP   45
2ucz.pdb                1  --------SKTAQKRLLKELQQLIKDSPPGIVAGPKS-----ENNIFIWDCLIQGPPDTP   47
                                         rl         d p g  a P         n   W   i Gp dtp

1a3s.pdb               53  WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED----------K-  101
1ayza.pdb              47  YEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ------------N-   93
1e2ca.pdb              53  YESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILK------------E-   99
2aak.pdb               48  WDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ------------N-   94
2uce.pdb               46  YAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILK------------D-   92
2ucz.pdb               48  YADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEE  107
                              g f l   F  dYP  PP   F     HPN    G  Cl IL               

1a3s.pdb              102  DWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP-S--  158
1ayza.pdb              94  RWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWEDDMD  153
1e2ca.pdb             100  NWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEYKKVLHEKYKTAQSDK--  156
2aak.pdb               95  QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT----  150
2uce.pdb               93  QWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYAV----  148
2ucz.pdb              108  RWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKSLG-F--  164
                            W p      iL s  sll  pN   p    a          y                 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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