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# Program: MUSTANG v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, P. J. Stuckey, J. C. Whisstock, and A. M. Lesk
# Rundate: Tue Aug 23 19:08:52 2005
# Report_file: results.html
################################################################################################
#====================================
# Aligned_structures: 4
#   1: 1ADJ.pdb
#   2: 1ATI.pdb
#   3: 1HC7.pdb
#   4: 1QF6.pdb
#
# Length:        896
# Identity:       11/896 (  1.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     49/896 (  5.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          607/896 ( 67.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ADJ.pdb                1  ------T-----------------------------------------------------    1
1ATI.pdb                1  -------AAS--------------------------------------------------    3
1HC7.pdb                1  KGLTPQ--SQ--------------------------------------------------    8
1QF6.pdb                1  PVITLP--D-GSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLS   57
                                                                                       

1ADJ.pdb                   ------------------------------------------------------------     
1ATI.pdb                   ------------------------------------------------------------     
1HC7.pdb                   ------------------------------------------------------------     
1QF6.pdb               58  IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVE  117
                                                                                       

1ADJ.pdb                   ------------------------------------------------------------     
1ATI.pdb                   ------------------------------------------------------------     
1HC7.pdb                   ------------------------------------------------------------     
1QF6.pdb              118  ALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEY  177
                                                                                       

1ADJ.pdb                   ------------------------------------------------------------     
1ATI.pdb                4  --------------------------------------------------------SLD-    6
1HC7.pdb                9  -------------------------------------------------------DFSE-   12
1QF6.pdb              178  VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWADKKALNAYLQRLEE  237
                                                                                       

1ADJ.pdb                2  -----------------------ARAVRGTKDLFGKELRMHQRIVATARKVLE-AA-GAL   36
1ATI.pdb                7  ----ELVALCKRRGFIFQS-SEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDME   61
1HC7.pdb               13  ----WYLEVIQKAELADYG------PVRGTIVVRPYGYAIWENIQQVLDRMFK-ET-GHQ   60
1QF6.pdb              238  AAKRDHRKIGKQLDLYHMQE-----EAPGMVFWHNDGWTIFRELEVFVRSKLK-EY-QYQ  290
                                                       G       g                 e     

1ADJ.pdb               37  ELVTPIFEETQVFEKGVGAA-TDIVR--------------KEMFTFQ------D-RG---   71
1ATI.pdb               62  GLDASVLTHRLVLHYSG-H-EAT-F-ADPMVDNWTPPRYFNMMFQDL------RGPRGGR  111
1HC7.pdb               61  NAYFPLFIPMSFL-----------FS--------------PELAVVTHAGGEEL------   89
1QF6.pdb              291  EVKGPFMMDRVLWEKTG-H-WDN-YK--------------DAMFTTS------S--E---  322
                               p                                     mf                

1ADJ.pdb               72  GRSLTLRPEGTAAMVRAYLEHGMKV---------WPQPVRLWMAGPMFRAERP-----QK  117
1ATI.pdb              112  GLLAYLRPETAQGIFVNFKNV----L-D---ATSRKLGFGIAQIGKAFRNEIT--PRNFI  161
1HC7.pdb               90  EEPLAVRPTSETVIGYMWSKW----I-RSWR----DLPQLLNQWGNVVRWEMR--T-RPF  137
1QF6.pdb              323  NREYCIKPMNCPGHVQIFNQG-----LKSYR----DLPLRMAEFGSCHRNEPSGSL-HGL  372
                                 rP                            lp      G   R E         

1ADJ.pdb              118  GRYRQFHQVNYEALGS-E-NPI-LDAEAVVLLYECLKELGLRRLKVKLSSVGDPE-DRAR  173
1ATI.pdb              162  FRVREFEQMEIEYFVRPG-EDEYWHRYWVEERLKWWQEMGLSR-ENLVP--YQ-------  210
1HC7.pdb              138  LRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLARE-Y-------AA--IPV------  181
1QF6.pdb              373  MRVRGFTQDDAHIFCTEE-QIRDEVNGCIRLVYDMYSTFGFEKIVVKLS--TRPEK----  425
                            R r F q                             e g                    

1ADJ.pdb              174  YNAYLREVLSPHREAL-SEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEA  232
1ATI.pdb                   ------------------------------------------------------------     
1HC7.pdb                   ------------------------------------------------------------     
1QF6.pdb              426  -------------RIGS---------------------------------------DEMW  433
                                                                                       

1ADJ.pdb              233  RAHLKEVERHLERLSVPYELEPALV-RGLDYYVRTAFEVHHEEIGAQ----SALGGGGRY  287
1ATI.pdb              211  ------------------QPP-ESSAHYAK--ATVDILYR-FP----H-GSLELEGIAQR  243
1HC7.pdb              182  --------------IEGLKTE-KEKFAGAV--YTTTIEAL-MK----DGKALQAGTSHYL  219
1QF6.pdb              434  DRAEADLAVALEENNIPFEYQLGEGAFYGP--KIEFTLY--DC----LDRAWQCGTVQLD  485
                                                                                 g     

1ADJ.pdb              288  DGLSE-LLG-------------------------------GPRVPGVGFA--FGVERVAL  313
1ATI.pdb              244  TDFDLGSHTKDQEALGITARVLRNEHSTQRLAYRDPETGKWFVPYVIEPS--AGVDRGVL  301
1HC7.pdb              220  GENFARAFD---------------------I-KFQDRDLQVKYVHTTSWG--LSW-RFIG  254
1QF6.pdb              486  FSLPSR-LS---------------------A-SYVGEDNERKVPVMIHRAILGSMERFIG  522
                                                                                   R   

1ADJ.pdb              314  ALEAEGFGLP---------------EE-KGPDLYLIPLT------E-EAVAEAFYLAEAL  350
1ATI.pdb              302  ALLAEAFTREELPNGEERIVLKLKPQ-LAPIKVAVIPLV----KNRPEITEYAKRLKARL  356
1HC7.pdb              255  AIIMTHGDDR---------GLVLPPR-LAPIQVVIVPIYKDES--RERVLEAAQGLRQAL  302
1QF6.pdb              523  ILTEEFA-------------GFFPTW-LAPVQVVIMNIT------D-SQSEYVNELTQKL  561
                           al  e                       ap  v   p             e a  L   L

1ADJ.pdb              351  RP-RLR-AEYALAP-RKPAKGLEEALKRGAAFAGFLGEDELR---------AGEVTLKRL  398
1ATI.pdb              357  LALGLGRVLYED-T-GNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDR  414
1HC7.pdb              303  LAQGLR-VHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLE---------GGQAVLASR  352
1QF6.pdb              562  SNAGIR-VKADLRN-EKIGFKIREHTLRRVPYMLVCGDKEVE---------SGKVAVRTR  610
                              glr v          g    e    g pf    g               g v    r

1ADJ.pdb              399  ATGEQVRLSREEVPGYLLQALG--------------------------------------  420
1ATI.pdb              415  DTMEQIRLHVDELEGFLRERLR-----W--------------------------------  437
1HC7.pdb              353  L-GGKETLPLAALPEALPGKLDAFHEE-LYRRALAFREDHTRKVDTYEAFKEAVQEGFAL  410
1QF6.pdb              611  RGKDLGSMDVNEVIEKLQQEIR-----SR--------------------------SLKQL  639
                                  l   e    L   l                                       

1ADJ.pdb                   --------------------------------------------------------     
1ATI.pdb                   --------------------------------------------------------     
1HC7.pdb              411  AFHCGDKACERLIQEETTATTRCVPFEAEPEEGFCVRCGRPSAYGKRVVFAKAY--  464
1QF6.pdb              640  ------------------------------------------------------EE  641
                                                                                   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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