Tableau information
Concept source: d1r3ya_ amino acid (a.a.) range (ASP17)(ARG365)
nSSEs in this Concept: 29
String of secondary struct.elems. (SSEs) defining this concept: HEHHHEHEEHHHEHHHEHHHEHEHEHHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP17) (GLY25) H1
(THR31) (ARG37) E2
(LEU43) (ALA51) H3
(PHE55) (SER61) H4
(CYS65) (PHE76) H5
(ASP79) (ILE83) E6
(LEU88) (LEU94) H7
(MET96) (MET100) E8
(GLY105) (GLU110) E9
(GLU114) (ARG120) H10
(ASP123) (GLY132) H11
(GLY132) (ARG144) H12
(PRO150) (GLY156) E13
(PRO158) (GLY168) H14
(SER171) (PRO185) H15
(PRO185) (GLY210) H16
(GLN212) (GLU218) E17
(GLU218) (HIS223) H18
(PRO226) (PHE232) H19
(LEU234) (GLY252) H20
(GLY252) (LYS263) E21
(LEU269) (ALA275) H22
(GLU278) (ASP283) E23
(PRO288) (CYS294) H24
(THR300) (ASP306) E25
(ASP306) (ALA312) H26
(SER313) (PHE328) H27
(ARG332) (ASN336) E28
(PRO347) (ARG365) H29
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -99.7° E2
H3 -103.0° -38.5° H3
H4 -100.7° -134.7° 97.3° H4
H5 91.1° 135.0° 165.1° -84.4° H5
E6 -94.1° -27.9° -14.5° -110.5° 162.9° E6
H7 -85.8° 48.6° 18.7° -93.3° -175.8° 20.9° H7
E8 125.0° 95.0° -120.2° 105.4° 45.7° -119.5° -138.5° E8
E9 -65.4° 56.6° 38.2° -97.2° -156.4° 34.0° 20.5° 151.6° E9
H10 -136.6° 104.7° 76.8° -38.3° -96.2° 91.2° 84.1° -88.3° 99.5° H10
H11 157.5° 96.5° 99.5° -78.3° -66.3° 107.4° 116.7° -37.3° 137.1° 51.7° H11
H12 -116.4° 139.4° 136.2° 58.4° -34.6° 148.5° 145.6° 49.6° -155.6° -61.6° -43.9° H12
E13 55.8° -43.8° -60.9° -137.2° 126.4° -47.0° -53.7° 117.4° -42.2° 137.2° 137.6° 160.6° E13
H14 103.4° -13.9° -51.3° -143.9° 121.2° -41.7° -62.4° 82.0° -69.6° 108.8° 89.0° 129.0° -49.0° H14
H15 -47.3° 88.7° 66.7° -76.5° -127.8° 66.0° 48.1° -172.1° 32.5° -97.6° 149.2° -129.1° 61.3° 101.1° H15
H16 -136.8° 121.6° 102.2° 41.4° -69.4° 115.9° 111.0° -67.4° 126.0° 27.0° -36.9° -34.9° 162.9° 119.7° -116.3° H16
E17 56.7° -54.5° -84.5° -156.9° 99.7° -70.0° -81.0° 93.3° -70.0° 159.1° 124.2° 132.8° -28.0° 51.0° -83.2° 160.4° E17
H18 41.3° -77.6° -104.7° -139.2° 82.8° -90.4° -96.8° 92.6° -80.7° -177.5° 129.5° 117.4° 44.1° 73.7° -81.3° -152.2° 23.2° H18
H19 -108.2° 87.1° 49.2° -48.1° -130.6° 62.7° 48.2° -125.4° 60.5° -39.5° -88.1° -98.1° 101.3° 98.4° 61.7° -65.5° 129.1° 140.3° H19
H20 -120.3° 113.2° 79.3° -24.1° -97.7° 93.7° 81.4° -101.0° 92.7° -16.3° -66.1° -64.9° 134.4° 120.4° 83.9° -34.3° 162.3° -161.5° -33.2° H20
E21 73.9° -67.2° -104.8° 157.8° 74.4° -91.5° -107.5° 63.8° -99.8° 149.0° 98.3° 104.0° -57.6° 56.8° -111.6° 131.1° -30.2° -32.8° 154.0° 164.4° E21
H22 -110.3° 104.9° 67.8° -29.8° -111.9° 81.5° 66.7° -116.4° 76.6° -28.5° -80.2° -80.5° 118.5° 115.1° 69.1° -50.5° 146.6° 150.2° -18.9° -16.2° 171.9° H22
E23 96.9° -58.4° -96.3° 154.7° 77.1° -86.1° -106.1° 49.3° -106.7° 126.5° 78.4° 97.4° -68.1° 45.1° -128.7° 114.5° -46.1° -55.6° 140.5° 142.7° -23.3° 150.7° E23
H24 -56.6° 100.3° 71.3° -60.3° -121.5° 74.6° 54.4° -164.0° 44.1° -83.7° -135.1° -114.5° 77.3° 113.7° 16.2° -100.4° 99.1° 94.8° -51.9° -69.0° 126.6° -55.3° 144.9° H24
E25 107.3° -57.4° -93.4° 146.8° 77.7° -85.2° -105.9° 43.2° -110.3° 116.1° 68.9° 92.7° -74.9° 43.5° -136.2° 105.6° -55.3° -66.0° 133.1° 132.3° -33.6° 140.8° -10.4° 152.2° E25
H26 137.9° -98.5° -114.7° 92.6° 50.5° -118.2° -133.3° -15.5° -152.1° 72.8° 22.2° 41.9° -129.3° -87.1° 169.1° 52.9° -107.6° -108.1° 110.3° 85.8° 78.8° -101.0° 62.2° -152.9° 54.5° H26
H27 40.1° 119.2° 96.9° -62.0° -96.9° 97.6° 78.9° 142.6° 64.0° -96.5° -138.6° -100.8° 83.2° 130.0° -31.6° -102.4° 94.9° 81.4° -74.6° -80.2° 113.7° -71.4° 136.9° -26.6° 147.3° -142.3° H27
E28 -125.0° -36.8° -65.0° 133.0° 103.1° -60.8° 81.1° 59.0° 93.0° 94.9° 63.7° 103.4° -73.9° -25.8° 125.4° 97.4° -68.5° -87.6° 101.7° 110.1° -60.1° 112.5° -39.2° 135.4° -31.5° -61.8° 155.8° E28
H29 61.7° 159.5° 132.8° -49.6° -58.5° 137.7° -117.4° 102.7° -105.0° -86.3° -103.8° -61.0° 117.1° 164.5° -72.5° -75.5° 113.6° 91.2° -90.9° -73.7° 111.6° -76.4° 128.2° -63.1° 133.2° 101.3° -41.2° 161.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1r3sa_ : (ASP17) (LYS359) [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]
d1r3wa_ : (ASP17) (LYS359) [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]
d1r3qa_ : (ASP17) (LYS359) [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]
d2infa_ : (PHE11) (MET349) [view usage] : c.1.22.0 |TIM beta/alpha-barrel |UROD/MetE-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1r3ra_ : (ASP17) (LYS359) [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]
d1jpha_ : (ASP17) (LYS359) [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]
d3gw0a_ : (ASP17) (ARG365) [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]
d3gw3a_ : (ASP17) (LYS359) [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]
d1r3ya_ : (ASP17) (ARG365) [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]
d1jpka_ : (ASP17) (LYS359) [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]
d1jpia_ : (ASP17) (LYS359) [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]
d1r3va_ : (ASP17) (LYS359) [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1