Protein Concepts Dictionary

Tableau information

Concept source:  d1r3ya_  amino acid (a.a.) range (ASP17)(ARG365)

nSSEs in this Concept: 29

String of secondary struct.elems. (SSEs) defining this concept: HEHHHEHEEHHHEHHHEHHHEHEHEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ASP17)   (GLY25) H1
	   (THR31)   (ARG37) E2
	   (LEU43)   (ALA51) H3
	   (PHE55)   (SER61) H4
	   (CYS65)   (PHE76) H5
	   (ASP79)   (ILE83) E6
	   (LEU88)   (LEU94) H7
	   (MET96)  (MET100) E8
	  (GLY105)  (GLU110) E9
	  (GLU114)  (ARG120) H10
	  (ASP123)  (GLY132) H11
	  (GLY132)  (ARG144) H12
	  (PRO150)  (GLY156) E13
	  (PRO158)  (GLY168) H14
	  (SER171)  (PRO185) H15
	  (PRO185)  (GLY210) H16
	  (GLN212)  (GLU218) E17
	  (GLU218)  (HIS223) H18
	  (PRO226)  (PHE232) H19
	  (LEU234)  (GLY252) H20
	  (GLY252)  (LYS263) E21
	  (LEU269)  (ALA275) H22
	  (GLU278)  (ASP283) E23
	  (PRO288)  (CYS294) H24
	  (THR300)  (ASP306) E25
	  (ASP306)  (ALA312) H26
	  (SER313)  (PHE328) H27
	  (ARG332)  (ASN336) E28
	  (PRO347)  (ARG365) H29

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                                                                                                         
E2      -99.7°   E2                                                                                                                                                                                                  
H3     -103.0°  -38.5°   H3                                                                                                                                                                                           
H4     -100.7° -134.7°   97.3°   H4                                                                                                                                                                                    
H5       91.1°  135.0°  165.1°  -84.4°   H5                                                                                                                                                                             
E6      -94.1°  -27.9°  -14.5° -110.5°  162.9°   E6                                                                                                                                                                      
H7      -85.8°   48.6°   18.7°  -93.3° -175.8°   20.9°   H7                                                                                                                                                               
E8      125.0°   95.0° -120.2°  105.4°   45.7° -119.5° -138.5°   E8                                                                                                                                                        
E9      -65.4°   56.6°   38.2°  -97.2° -156.4°   34.0°   20.5°  151.6°   E9                                                                                                                                                 
H10    -136.6°  104.7°   76.8°  -38.3°  -96.2°   91.2°   84.1°  -88.3°   99.5°   H10                                                                                                                                         
H11     157.5°   96.5°   99.5°  -78.3°  -66.3°  107.4°  116.7°  -37.3°  137.1°   51.7°   H11                                                                                                                                  
H12    -116.4°  139.4°  136.2°   58.4°  -34.6°  148.5°  145.6°   49.6° -155.6°  -61.6°  -43.9°   H12                                                                                                                           
E13      55.8°  -43.8°  -60.9° -137.2°  126.4°  -47.0°  -53.7°  117.4°  -42.2°  137.2°  137.6°  160.6°   E13                                                                                                                    
H14     103.4°  -13.9°  -51.3° -143.9°  121.2°  -41.7°  -62.4°   82.0°  -69.6°  108.8°   89.0°  129.0°  -49.0°   H14                                                                                                             
H15     -47.3°   88.7°   66.7°  -76.5° -127.8°   66.0°   48.1° -172.1°   32.5°  -97.6°  149.2° -129.1°   61.3°  101.1°   H15                                                                                                      
H16    -136.8°  121.6°  102.2°   41.4°  -69.4°  115.9°  111.0°  -67.4°  126.0°   27.0°  -36.9°  -34.9°  162.9°  119.7° -116.3°   H16                                                                                               
E17      56.7°  -54.5°  -84.5° -156.9°   99.7°  -70.0°  -81.0°   93.3°  -70.0°  159.1°  124.2°  132.8°  -28.0°   51.0°  -83.2°  160.4°   E17                                                                                        
H18      41.3°  -77.6° -104.7° -139.2°   82.8°  -90.4°  -96.8°   92.6°  -80.7° -177.5°  129.5°  117.4°   44.1°   73.7°  -81.3° -152.2°   23.2°   H18                                                                                 
H19    -108.2°   87.1°   49.2°  -48.1° -130.6°   62.7°   48.2° -125.4°   60.5°  -39.5°  -88.1°  -98.1°  101.3°   98.4°   61.7°  -65.5°  129.1°  140.3°   H19                                                                          
H20    -120.3°  113.2°   79.3°  -24.1°  -97.7°   93.7°   81.4° -101.0°   92.7°  -16.3°  -66.1°  -64.9°  134.4°  120.4°   83.9°  -34.3°  162.3° -161.5°  -33.2°   H20                                                                   
E21      73.9°  -67.2° -104.8°  157.8°   74.4°  -91.5° -107.5°   63.8°  -99.8°  149.0°   98.3°  104.0°  -57.6°   56.8° -111.6°  131.1°  -30.2°  -32.8°  154.0°  164.4°   E21                                                            
H22    -110.3°  104.9°   67.8°  -29.8° -111.9°   81.5°   66.7° -116.4°   76.6°  -28.5°  -80.2°  -80.5°  118.5°  115.1°   69.1°  -50.5°  146.6°  150.2°  -18.9°  -16.2°  171.9°   H22                                                     
E23      96.9°  -58.4°  -96.3°  154.7°   77.1°  -86.1° -106.1°   49.3° -106.7°  126.5°   78.4°   97.4°  -68.1°   45.1° -128.7°  114.5°  -46.1°  -55.6°  140.5°  142.7°  -23.3°  150.7°   E23                                              
H24     -56.6°  100.3°   71.3°  -60.3° -121.5°   74.6°   54.4° -164.0°   44.1°  -83.7° -135.1° -114.5°   77.3°  113.7°   16.2° -100.4°   99.1°   94.8°  -51.9°  -69.0°  126.6°  -55.3°  144.9°   H24                                       
E25     107.3°  -57.4°  -93.4°  146.8°   77.7°  -85.2° -105.9°   43.2° -110.3°  116.1°   68.9°   92.7°  -74.9°   43.5° -136.2°  105.6°  -55.3°  -66.0°  133.1°  132.3°  -33.6°  140.8°  -10.4°  152.2°   E25                                
H26     137.9°  -98.5° -114.7°   92.6°   50.5° -118.2° -133.3°  -15.5° -152.1°   72.8°   22.2°   41.9° -129.3°  -87.1°  169.1°   52.9° -107.6° -108.1°  110.3°   85.8°   78.8° -101.0°   62.2° -152.9°   54.5°   H26                         
H27      40.1°  119.2°   96.9°  -62.0°  -96.9°   97.6°   78.9°  142.6°   64.0°  -96.5° -138.6° -100.8°   83.2°  130.0°  -31.6° -102.4°   94.9°   81.4°  -74.6°  -80.2°  113.7°  -71.4°  136.9°  -26.6°  147.3° -142.3°   H27                  
E28    -125.0°  -36.8°  -65.0°  133.0°  103.1°  -60.8°   81.1°   59.0°   93.0°   94.9°   63.7°  103.4°  -73.9°  -25.8°  125.4°   97.4°  -68.5°  -87.6°  101.7°  110.1°  -60.1°  112.5°  -39.2°  135.4°  -31.5°  -61.8°  155.8°   E28           
H29      61.7°  159.5°  132.8°  -49.6°  -58.5°  137.7° -117.4°  102.7° -105.0°  -86.3° -103.8°  -61.0°  117.1°  164.5°  -72.5°  -75.5°  113.6°   91.2°  -90.9°  -73.7°  111.6°  -76.4°  128.2°  -63.1°  133.2°  101.3°  -41.2°  161.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1r3sa_ :    (ASP17)  (LYS359)   [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]
 d1r3wa_ :    (ASP17)  (LYS359)   [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]
 d1r3qa_ :    (ASP17)  (LYS359)   [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]
 d2infa_ :    (PHE11)  (MET349)   [view usage] : c.1.22.0 |TIM beta/alpha-barrel |UROD/MetE-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
 d1r3ra_ :    (ASP17)  (LYS359)   [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]
 d1jpha_ :    (ASP17)  (LYS359)   [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]
 d3gw0a_ :    (ASP17)  (ARG365)   [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]
 d3gw3a_ :    (ASP17)  (LYS359)   [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]
 d1r3ya_ :    (ASP17)  (ARG365)   [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]
 d1jpka_ :    (ASP17)  (LYS359)   [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]
 d1jpia_ :    (ASP17)  (LYS359)   [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]
 d1r3va_ :    (ASP17)  (LYS359)   [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1