Protein Concepts Dictionary

Tableau information

Concept source:  d1wdpa_  amino acid (a.a.) range (ARG70)(PRO479)

nSSEs in this Concept: 27

String of secondary struct.elems. (SSEs) defining this concept: HEHEEHHHEHHHEHHHEHHHEHEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ARG70)   (GLY83) H1
	   (LEU84)   (MET90) E2
	  (PRO108)  (ASN118) H3
	  (PHE122)  (ARG126) E4
	  (THR129)  (GLU133) E5
	  (THR136)  (GLU142) H6
	  (THR149)  (SER166) H7
	  (SER166)  (GLY172) H8
	  (ASP176)  (GLY182) E9
	  (LYS211)  (GLY225) H10
	  (THR245)  (LYS249) H11
	  (THR256)  (ALA284) H12
	  (LYS289)  (HIS300) E13
	  (HIS300)  (GLU306) H14
	  (ALA309)  (GLY315) H15
	  (ARG326)  (HIS336) H16
	  (HIS336)  (THR342) E17
	  (ARG347)  (PRO352) H18
	  (PRO359)  (GLN365) H19
	  (VAL366)  (ASP374) H20
	  (ILE375)  (ASN381) E21
	  (ASP387)  (ARG399) H22
	  (PHE414)  (ARG420) E23
	  (SER422)  (GLN427) H24
	  (LYS428)  (ALA443) H25
	  (PRO460)  (PRO466) E26
	  (ILE470)  (PRO479) H27

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                                                                                           
E2      151.9°   E2                                                                                                                                                                                    
H3     -131.3°   22.2°   H3                                                                                                                                                                             
E4       94.5°   62.5°  -40.6°   E4                                                                                                                                                                      
E5      -52.5° -147.3°  163.2°  147.0°   E5                                                                                                                                                               
H6     -107.9°   83.7°  102.1°  138.4°  -63.7°   H6                                                                                                                                                        
H7      -50.2°  156.1°  178.3° -141.1°  -16.0°  -76.4°   H7                                                                                                                                                 
H8       24.6° -128.2° -110.1°   80.0°   68.4° -106.5°  -71.2°   H8                                                                                                                                          
E9      139.7°  -27.9°  -23.7°   46.4° -165.6°  109.5°  156.1° -125.9°   E9                                                                                                                                   
H10     -84.1°   70.4°   59.2°  -59.2°  109.2°   88.1° -121.3°  -59.6°  -82.5°   H10                                                                                                                           
H11     -42.9°  111.7°   96.9°   76.0°  -77.0°   96.9°  -84.1°  -19.0°  117.2°   41.5°   H11                                                                                                                    
H12     -77.5°  125.9°  147.7° -171.6°  -25.4°   48.4°  -30.6°  -93.4°  140.7°  121.7°  -99.4°   H12                                                                                                             
E13      98.4°  -66.8°  -49.1°  -22.2°  145.7° -150.5°  132.4°   91.8°  -42.0°  -81.3°  -93.3°  155.4°   E13                                                                                                      
H14     -83.2°   68.8°   51.4°   40.4° -121.6° -106.9° -129.7°  -59.5°   72.0°  -19.4°  -45.6° -139.2°   62.5°   H14                                                                                               
H15    -127.8°   71.0°   92.6°  133.3°  -77.4°  -23.5°  -85.7° -129.9°   92.2°  101.7°  119.7°   55.1°  133.8° -117.6°   H15                                                                                        
H16     -86.1°  111.6°  131.3°  164.6°  -35.8°   29.4°  -47.1°  -94.9°  134.1°  105.6°   94.4°  -19.9°  172.1° -124.8°   42.0°   H16                                                                                 
E17      86.8°  -91.6°  -79.7°  -54.5°  117.0°  156.7°  101.4°   94.4°  -63.7° -111.8° -106.0°  121.6°  -34.0°  -92.4°  134.3°  140.9°   E17                                                                          
H18     135.5°  -50.6°  -52.5°  -63.2°  139.8°  114.1°  127.3°  138.2°  -28.8° -110.9° -139.2°  120.9°  -47.0°  -98.0°   91.2°  125.6°   48.8°   H18                                                                   
H19     -89.5°   90.9°  101.8°  124.5°  -61.5°  -26.8°  -77.2°  -81.7°  118.8°   66.3°   70.2°  -58.8°  145.7°   85.7°  -49.5°  -40.1° -176.0°  135.0°   H19                                                            
H20     -81.6°   97.3°  106.0°  123.5°  -57.2°  -33.6°  -73.2°  -73.9°  124.9°   64.4°   63.3°  -58.5°  145.6°   83.5°  -56.8°  -41.3° -168.1°  142.9°   -8.0°   H20                                                     
E21      94.2°  -96.3°  -93.0°  -78.2°  103.3°  132.2°   87.5°  110.3°  -71.3° -137.0° -126.2°   99.5°  -56.3° -117.6°  112.5°  117.1°  -25.6°   45.8°  156.7° -158.0°   E21                                              
H22     -88.6°   80.3°   83.7°   99.7°  -80.0°  -48.2°  -95.7°  -71.8°  105.3°   41.4°   55.3°  -82.9°  121.5°   60.9°  -67.0°  -64.9°  153.2° -130.8°  -24.9°  -24.5°  176.6°   H22                                       
E23     112.3°  -83.3°  -86.4°  -85.1°  107.5°  115.9°   93.5°  130.0°  -62.8° -142.3° -145.6°   95.4°  -63.3° -125.2°   94.2°  109.0°  -40.8°   34.2°  142.7°  148.2°  -19.7°  158.2°   E23                                
H24      10.1°  154.9°  132.8°   93.3°  -54.6° -114.4°  -48.9°   32.7°  135.6°   92.1°  -51.6°  -78.4°   93.5°  -88.6° -131.9°  -89.9°   78.0°  126.4°  -98.4°  -90.6°   84.2°  -98.7°  102.3°   H24                         
H25     -75.1°   89.6°   87.8°   93.6°  -77.5°  -60.8°  -92.1°  -56.8°  111.2°   34.8°   40.1°  -86.9°  115.7°   53.2°  -81.3°  -71.6°  142.2° -139.4°  -34.8°  -30.7°  166.1°  -15.2°  172.5°  -85.1°   H25                  
E26     120.1°  -31.8°   18.1°   43.1° -147.2°  -95.5° -162.1°   96.5°  -41.8°   41.5°   81.0° -143.8°   58.9°   37.0°  -93.0°  124.2°  -92.3°  -70.6°   88.3°   91.1° -109.4°   67.5° -104.4°  124.8°   70.0°   E26           
H27      49.5° -115.2°  -94.3°  -54.0°   97.2°  157.2°   87.4°   52.3°  -91.8°  -86.8°  -65.2°  117.9°  -49.8°  -71.3°  171.0°  133.0°  -42.0°  -88.5°  134.0°  126.2°  -61.4°  119.6°  -80.5°   43.7°  104.7°   95.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1wdpa_ :    (ARG70)  (PRO479)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Soybean (Glycine max) [TaxId: 3847]
 d1wdqa1 :    (TYR72)  (PRO479)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |beta-Amylase |Soybean (Glycine max) [TaxId: 3847]
 d1ukoa_ :    (ARG70)  (PRO479)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |beta-Amylase |Soybean (Glycine max) [TaxId: 3847]
 d1wdsa1 :    (ARG70)  (PRO479)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |beta-Amylase |Soybean (Glycine max) [TaxId: 3847]
 d1bfna_ :    (TYR72)  (PRO479)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |beta-Amylase |Soybean (Glycine max) [TaxId: 3847]
 d1v3ha_ :    (ARG70)  (PRO479)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |beta-Amylase |Soybean (Glycine max) [TaxId: 3847]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1