Protein Concepts Dictionary

Tableau information

Concept source:  d3nl1a_  amino acid (a.a.) range (LYS60)(GLU365)

nSSEs in this Concept: 26

String of secondary struct.elems. (SSEs) defining this concept: HEEEEEEEEEEHEHHEEEEEEEEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LYS60)   (LEU74) H1
	   (ARG84)   (ASN90) E2
	  (THR102)  (GLY111) E3
	  (ARG113)  (PRO117) E4
	  (GLU118)  (SER122) E5
	  (ASN124)  (VAL130) E6
	  (GLY134)  (ASN140) E7
	  (ASP142)  (ARG148) E8
	  (GLY149)  (PRO155) E9
	  (GLY161)  (THR166) E10
	  (GLN168)  (ASP177) E11
	  (ILE178)  (MET184) H12
	  (VAL186)  (PHE191) E13
	  (SER205)  (LEU210) H14
	  (TRP235)  (GLY252) H15
	  (GLY260)  (TYR266) E16
	  (THR278)  (ARG287) E17
	  (GLY289)  (GLY299) E18
	  (GLY299)  (VAL305) E19
	  (ALA309)  (ASN315) E20
	  (GLU317)  (LYS323) E21
	  (ASP325)  (PRO330) E22
	  (PRO334)  (ALA339) E23
	  (GLN342)  (ASP350) E24
	  (PRO352)  (SER358) H25
	  (PHE359)  (GLU365) E26

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                                                                                    
E2      144.3°   E2                                                                                                                                                                             
E3      -55.0°  148.2°   E3                                                                                                                                                                      
E4       87.2°  -67.8°  141.5°   E4                                                                                                                                                               
E5      129.0°  -29.4° -175.9°   42.3°   E5                                                                                                                                                        
E6     -107.6°   96.0°  -54.3°  163.7°  122.0°   E6                                                                                                                                                 
E7       78.4°  -85.4°  126.3°  -22.2°  -56.7° -165.6°   E7                                                                                                                                          
E8     -129.9°   60.5°  -87.8°  126.8°   89.3°  -37.7°  145.9°   E8                                                                                                                                   
E9       61.1°  -92.9°  115.2°  -26.3°  -68.7°  168.3°   23.3° -146.8°   E9                                                                                                                            
E10     -91.6°  113.3°  -37.2° -178.7°  138.9°  -17.4°  157.3°  -54.1°  152.4°   E10                                                                                                                    
E11     111.8°  -45.4°  165.9°  -24.7°   17.7°  139.7°  -39.9°  106.0°  -51.0°  156.6°   E11                                                                                                             
H12      74.6°  -74.1°  129.1°   19.4°   55.0° -158.8°   34.7° -124.8°  -22.0° -159.7°   39.5°   H12                                                                                                      
E13     -41.0° -162.5°   15.7° -126.1°  167.6°  -69.9°  110.9° -103.1°   99.9°  -52.7°  150.2° -115.5°   E13                                                                                               
H14     133.0°   68.9° -119.3°   79.6°  -57.9°  -94.4°   72.6°  -92.6°   95.9° -101.3°   64.4°   99.0°  121.1°   H14                                                                                        
H15    -173.6°   41.5° -121.8°   95.0°   54.1°  -71.1°  101.5°  -52.8°  120.5°  -86.3°   70.7°  109.1° -134.9°   42.0°   H15                                                                                 
E16      35.7° -122.9°   86.2°  -55.6°  -97.4°  140.5°  -42.8° -162.0°  -30.0°  123.2°  -79.7°  -50.1°   70.6°  105.2°  143.1°   E16                                                                          
E17    -127.6°   80.6°  -72.9°  145.2°  103.1°   21.0° -148.1°   32.8° -170.7°   36.0°  120.6°  154.3°  -87.9°  -75.6°  -50.4°  155.6°   E17                                                                   
E18      65.3°  -84.5°  120.3°   23.7°   63.8° -163.1°   31.3° -134.4°   12.6° -155.1°   47.1°  -10.6° -106.0°  101.4°  117.7°  -39.5°  164.9°   E18                                                            
E19     -82.9°  124.0°  -27.9° -168.1° -148.1°  -28.1° -147.1°  -65.0°  142.6°   10.9° -164.6°  156.0°   42.8° -102.4°  -94.2°  112.8°  -45.1° -148.1°   E19                                                     
E20     101.8°  -44.6° -150.9°   30.6°   32.7° -135.3°   52.7°  -97.7°  -50.5° -149.9°   26.1°  -29.8° -141.9°   89.1°   82.9°  -79.8°  124.5°  -40.4° -159.3°   E20                                              
E21     -54.0° -161.5°   32.0° -121.4° -148.0°  -74.1° -100.5° -111.7°   99.3°   57.8° -138.2°  120.3°   25.6°  -96.0° -120.0°   70.1°  -85.5°  109.7°  -46.9°  149.8°   E21                                       
E22     105.9°  -48.3° -160.9°  -19.8°   23.1°  144.0°   38.2°  108.3°  -45.9°  161.4°    7.2°  -32.6° -145.8°   71.4°   77.0°  -75.4°  126.2°  -40.7°  171.2°   20.6° -138.5°   E22                                
E23     -89.2°  123.3°   36.5° -158.4° -139.5°   33.4° -136.6°   70.5° -141.8°   21.5° -151.7° -162.6°   48.4°  -87.5°  -86.6°  112.6°  -43.1°  152.0°   15.9°  167.6°  -42.6° -158.8°   E23                         
E24      66.0°  -85.2°  121.0°   21.8°   63.1° -166.9°   27.4° -137.3°    9.5° -156.9°  -46.0°  -12.6°  106.2°   98.1°  116.6°  -38.1°  165.8°    3.9°  148.8°  -41.7°  108.1°  -40.0°  150.7°   E24                  
H25     112.2°  -54.4°  156.3°  -29.1°  -25.2°  139.5°  -34.2°  113.1°  -52.2°  152.0°  -15.7°  -47.9°  143.0°   51.8°   68.5°  -77.0°  118.5°   52.6° -154.1°   41.6° -124.7°   21.2° -138.6°   50.3°   H25           
E26    -135.3°   68.3°  -82.9°  135.4°   93.3°   28.6° -146.0°   20.5°  161.3°  -45.8°  111.1°  140.8°  -98.5°  -77.8°  -44.5°  168.7°  -13.9°  151.3°  -56.0°  111.3°  -98.9°  115.7°  -56.3°  153.0° -112.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2phdd_ :    (GLY80)  (GLU365)   [view usage] : b.82.1.23 |Double-stranded beta-helix |RmlC-like cupins |Gentisate 1,2-dioxygenase-like |automated matches |Pseudaminobacter salicylatoxidans [TaxId: 93369]
 d4faga_ :    (TRP61)  (GLU365)   [view usage] : b.82.1.23 |Double-stranded beta-helix |RmlC-like cupins |Gentisate 1,2-dioxygenase-like |automated matches |Pseudaminobacter salicylatoxidans [TaxId: 93369]
 d3nw4a_ :    (LYS60)  (GLU365)   [view usage] : b.82.1.23 |Double-stranded beta-helix |RmlC-like cupins |Gentisate 1,2-dioxygenase-like |automated matches |Pseudaminobacter salicylatoxidans [TaxId: 93369]
 d3njza_ :    (LYS60)  (GLU365)   [view usage] : b.82.1.23 |Double-stranded beta-helix |RmlC-like cupins |Gentisate 1,2-dioxygenase-like |automated matches |Pseudaminobacter salicylatoxidans [TaxId: 93369]
 d3nl1a_ :    (LYS60)  (GLU365)   [view usage] : b.82.1.23 |Double-stranded beta-helix |RmlC-like cupins |Gentisate 1,2-dioxygenase-like |automated matches |Pseudaminobacter salicylatoxidans [TaxId: 93369]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.82