Protein Concepts Dictionary

Tableau information

Concept source:  d1vaha2  amino acid (a.a.) range (THR11)(VAL401)

nSSEs in this Concept: 26

String of secondary struct.elems. (SSEs) defining this concept: EHEHHEHHHHEHHEHEHHEHHEHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (THR11)   (PHE17) E1
	   (TRP21)   (GLY36) H2
	   (GLY38)   (SER43) E3
	   (PRO57)   (GLN63) H4
	   (GLU76)   (GLY90) H5
	   (GLY90)  (ASN100) E6
	  (SER132)  (ASN137) H7
	  (ASN137)  (CYS141) H8
	  (ASP153)  (ASP159) H9
	  (LYS172)  (ILE189) H10
	  (ALA192)  (ALA198) E11
	  (ALA198)  (TRP203) H12
	  (TRP203)  (LEU214) H13
	  (PHE229)  (GLU233) E14
	  (LYS243)  (GLY251) H15
	  (GLY251)  (PHE256) E16
	  (PHE256)  (LYS268) H17
	  (LYS273)  (ASN279) H18
	  (ALA292)  (VAL296) E19
	  (ASN298)  (GLY304) H20
	  (ALA318)  (ALA330) H21
	  (PHE335)  (SER341) E22
	  (ASP353)  (ILE358) H23
	  (GLU369)  (ASN373) E24
	  (THR376)  (ASN380) E25
	  (TRP388)  (VAL401) H26

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                                                                                    
H2      154.2°   H2                                                                                                                                                                             
E3      -25.1°  158.7°   E3                                                                                                                                                                      
H4      108.8°  -96.9°   91.1°   H4                                                                                                                                                               
H5      156.0°   -4.9° -163.7°  -95.0°   H5                                                                                                                                                        
E6      -53.1°  134.3°  -28.9°  -78.9° -138.4°   E6                                                                                                                                                 
H7     -125.1°   40.0° -118.8°  108.7°   44.9°  -97.8°   H7                                                                                                                                          
H8      -86.7°   83.0°  -75.8°  110.1°   87.9°  -57.3°   43.0°   H8                                                                                                                                   
H9       65.1° -117.3°   82.1°  -90.9° -112.9° -108.3°  150.0° -149.4°   H9                                                                                                                            
H10     109.7°  -59.1°  134.5°  113.3°  -55.7°  162.5°  -90.1° -124.3°   60.8°   H10                                                                                                                    
E11     -55.3°  117.8°  -40.9° -103.5°  122.7°  -27.8°  -77.9°  -34.9°  120.3°  143.1°   E11                                                                                                             
H12      96.8° -105.0°   73.1°  -29.8° -105.5°   52.6°   96.3°   82.5° -111.1° -142.2°   74.4°   H12                                                                                                      
H13     106.2°  -83.3°  117.9°   70.8°  -78.4°  134.7° -123.3° -166.3°   41.7°  -47.3°  158.8°  100.4°   H13                                                                                               
E14     -50.5°  115.0°  -44.8° -119.5°  119.7°  -41.7°  -76.4°  -36.3°  114.0°  127.1°  -16.2°  -90.6°  155.6°   E14                                                                                        
H15     108.8°  -86.2°  114.6°   57.3°  -81.3°  125.1°  125.0°  162.2°  -48.3°  -59.7°  152.4°   86.8°  -13.5°  158.6°   H15                                                                                 
E16     -64.8°   90.5°  -75.7° -159.1°   93.9°  -81.9°  -65.8°  -51.4°  103.0°   87.2°  -56.0° -129.3°  129.6°  -40.4°  143.0°   E16                                                                          
H17     -88.4°   65.9° -102.9°  161.6°   68.4° -107.7°  -54.0°  -63.0°  102.8°   64.7°  -80.4° -144.7°  111.6°  -66.2° -124.4°  -27.5°   H17                                                                   
H18     122.8°  -82.9°  106.8°   15.9°  -80.4°   94.0°  101.9°  115.4°  -90.9°  -99.7°  116.8°   42.5°  -61.9°  133.0°  -48.9°  166.1° -148.8°   H18                                                            
E19     -54.7°  100.2°  -75.6°  161.3°  101.4°  -94.3°  -89.4°  -79.7°   74.5°   70.0°  -75.1° -146.9°  103.5°  -59.1°  116.2°  -28.7°  -37.2° -164.8°   E19                                                     
H20     -54.7°  102.2°  -62.3° -146.5°  106.0°  -68.0°  -72.0°  -46.7°  104.1°  100.1°  -43.1° -117.4°  138.2°   27.0°  150.4°  -14.2°  -41.5°  159.3°  -34.7°   H20                                              
H21     144.7°  -61.0°  125.5°   36.0°  -59.0°  105.9°   81.7°  105.7° -104.3°  -90.7°  121.2°   53.8°  -66.6°  135.5°  -56.6°  147.4°  126.8°  -22.2° -158.8°  151.4°   H21                                       
E22     -28.3°  129.8°  -53.2°  129.6°  129.8°  -79.8° -119.2°  -95.4°   54.2°   82.7°  -73.6°  124.6°   94.0°  -62.1°  102.4°  -53.6°  -68.9°  138.9°  -31.8°  -50.6° -157.9°   E22                                
H23      94.5° -102.0°  -98.7°   54.3°   97.2° -111.1°  140.2° -163.8°  -40.3°   70.4° -137.3°  -81.4°   23.8° -143.0°   15.9°  142.8°  133.2°  -51.0°  114.0°  143.8°  -64.8°   93.2°   H23                         
E24     118.3°   37.3°  137.1° -131.6°   37.9°  139.2°   51.5°   84.1°  -98.6°  -40.8°  111.6° -141.4°  -85.5°   99.5°  -95.7°   62.2°   34.7° -116.1°   63.6°   76.2°  -96.1°   92.5° -109.3°   E24                  
E25      24.3° -161.0°   -2.2°   90.3° -165.9°  -30.5° -121.0°  -78.0°   80.0°  133.2°  -43.2°   73.3°  115.7°  -46.8°  112.4°  -77.1° -104.1°  105.9°  -75.9°  -63.8°  125.2°  -52.5°   96.5°  138.0°   E25           
H26     148.7°  -56.6°  126.8°  -40.6°  -55.2°  104.2°   74.3°   98.3° -111.9°  -93.0°  116.3°  -53.8°  -73.3°  129.7°  -63.9°  140.0°  121.4°  -28.5°  156.6°  143.7°   -7.8° -165.7°  -72.6°  -93.0°  126.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1kgwa2 :    (THR11)  (VAL401)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Animal alpha-amylase |Human (Homo sapiens) [TaxId: 9606]
 d1jxka2 :    (THR11)  (VAL396)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Animal alpha-amylase |Human (Homo sapiens) [TaxId: 9606]
 d1xgza2 :    (THR11)  (VAL401)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1kgxa2 :    (THR11)  (VAL401)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Animal alpha-amylase |Human (Homo sapiens) [TaxId: 9606]
 d3dhpa2 :    (THR11)  (VAL401)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1hx0a2 :    (THR11)  (VAL401)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Animal alpha-amylase |Pig (Sus scrofa) [TaxId: 9823]
 d1kbba2 :    (THR11)  (VAL401)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Animal alpha-amylase |Human (Homo sapiens) [TaxId: 9606]
 d3l2la1 :    (THR11)  (VAL401)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Pig (Sus scrofa) [TaxId: 9823]
 d1vaha2 :    (THR11)  (VAL401)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Pig (Sus scrofa) [TaxId: 9823]
 d1jfha2 :    (THR11)  (VAL401)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Animal alpha-amylase |Pig (Sus scrofa) [TaxId: 9823]
 d1osea2 :    (THR11)  (VAL401)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Animal alpha-amylase |Pig (Sus scrofa) [TaxId: 9823]
 d1ppia2 :    (THR11)  (VAL401)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Animal alpha-amylase |Pig (Sus scrofa) [TaxId: 9823]
 d1pifa2 :    (THR11)  (VAL401)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Animal alpha-amylase |Pig (Sus scrofa) [TaxId: 9823]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1