Tableau information
Concept source: d2vi8a_ amino acid (a.a.) range (PHE12)(THR404)
nSSEs in this Concept: 25
String of secondary struct.elems. (SSEs) defining this concept: HHHEHEHEHEHEHEEHHHEHEEHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PHE12) (ALA24) H1
(ARG37) (ASN49) H2
(CYS64) (LEU81) H3
(GLU85) (GLN90) E4
(SER93) (THR104) H5
(ASP110) (GLY114) E6
(ASN130) (GLN135) H7
(ASN137) (GLY142) E8
(ASP151) (ARG163) H9
(LYS165) (ALA170) E10
(PHE180) (VAL190) H11
(TYR193) (MET198) E12
(ALA202) (GLY208) H13
(HIS218) (THR223) E14
(GLY233) (GLN239) E15
(GLN239) (GLN255) H16
(LEU259) (LEU274) H17
(ASP277) (GLY300) H18
(HIS311) (LEU317) E19
(THR323) (GLY335) H20
(THR337) (THR342) E21
(GLY355) (ALA361) E22
(ALA361) (GLY367) H23
(GLY369) (ASN386) H24
(SER389) (THR404) H25
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 154.4° H2
H3 16.2° -144.7° H3
E4 136.7° -66.0° 132.1° E4
H5 90.5° 64.0° -82.1° 121.3° H5
E6 46.3° -158.2° 57.1° -98.7° 136.6° E6
H7 -94.4° 62.1° -82.5° 109.2° -16.3° -139.6° H7
E8 27.4° 174.6° 39.0° -114.8° 117.9° -18.9° -121.3° E8
H9 -133.1° 24.1° -120.9° 78.6° -44.3° 174.0° 38.8° 159.9° H9
E10 -71.0° -133.4° 81.8° -79.1° 159.5° -24.9° -164.0° -43.7° 155.6° E10
H11 111.4° -45.9° -98.9° 94.5° -27.0° 155.4° 17.1° 137.9° -22.0° 171.6° H11
E12 -83.8° -121.1° 93.7° -66.5° 171.9° -37.5° -169.9° -56.4° 142.4° -13.2° 160.9° E12
H13 -57.5° 110.8° 69.5° -149.0° 78.7° 73.8° 94.1° 65.6° -111.3° 83.7° -104.4° 93.4° H13
E14 107.9° -97.7° 113.0° -37.8° 159.1° -63.1° 146.1° -81.2° 115.3° -41.4° 132.2° -28.7° -119.3° E14
E15 -64.7° 90.6° -63.5° 155.0° -34.4° 106.2° -48.4° 89.3° -76.4° 125.5° -61.4° 137.6° 46.3° 165.5° E15
H16 140.9° -60.2° 133.9° 7.3° 114.0° -105.6° 102.0° -121.1° 71.5° -86.4° 87.1° -73.8° -152.8° -45.1° 147.8° H16
H17 -20.0° 151.9° 36.0° 139.6° -97.3° 40.9° -105.9° 25.8° -141.4° 62.3° -122.6° 75.5° -42.0° 103.3° -65.2° 146.4° H17
H18 64.3° -122.5° -54.0° 78.9° -103.9° -65.6° -91.3° -62.5° 108.5° 76.6° 97.0° 78.9° -121.9° 76.5° -108.9° 79.9° -81.0° H18
E19 80.0° -106.9° -68.4° 66.4° -101.2° -78.6° -86.3° -77.9° 95.4° 84.6° 87.8° 83.5° -137.4° 73.2° -115.6° 66.2° 97.1° 16.1° E19
H20 102.0° -97.2° 116.7° -71.4° 142.5° 62.2° 154.4° 78.4° -121.3° 40.6° -142.2° 34.8° 78.7° -44.5° 122.9° -77.3° 85.3° 113.4° 115.7° H20
E21 -76.5° 83.9° -61.9° 110.5° -36.9° -116.9° -25.7° -100.4° 59.8° -139.0° 38.6° -145.5° -99.4° 137.0° -55.4° 104.6° -93.0° -67.1° -65.4° 178.1° E21
E22 -93.3° 88.3° 108.3° -107.5° 99.9° 81.6° 115.3° 86.4° -104.3° 73.3° -114.1° -74.8° 42.3° -89.2° 79.3° -110.6° 73.7° 147.2° 157.9° -44.8° 133.8° E22
H23 -86.4° -106.4° 102.5° -93.6° 128.4° 57.3° 144.3° 68.4° -127.9° 44.3° -142.5° -45.7° 56.7° -64.4° 101.9° -99.4° 67.5° 120.5° 128.7° 22.2° -155.9° -29.3° H23
H24 98.1° -88.2° -85.2° 53.9° -95.7° -95.0° -79.5° -96.5° 79.0° 95.6° 76.2° 90.8° -154.5° 72.4° -119.9° 51.7° -115.8° -34.9° -18.9° 116.8° -64.7° 160.5° 135.7° H24
H25 98.6° -76.0° 111.0° -113.0° 82.5° 97.7° 97.6° 99.1° -88.4° 91.3° -96.2° 92.6° 41.5° -103.8° 66.7° -113.8° 80.9° 161.5° 176.0° -60.8° 118.1° 18.1° 47.4° -163.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2vmra_ : (PHE12) (ASP405) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Serine hydroxymethyltransferase |Bacillus stearothermophilus [TaxId: 1422]
d4oyta_ : (HIS15) (ASN422) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Plasmodium vivax [TaxId: 126793]
d2vgsa_ : (PRO9) (ASP405) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Serine hydroxymethyltransferase |Bacillus stearothermophilus [TaxId: 1422]
d2vmva_ : (ASP8) (LEU403) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Serine hydroxymethyltransferase |Bacillus stearothermophilus [TaxId: 1422]
d2vi8a_ : (PHE12) (THR404) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Serine hydroxymethyltransferase |Bacillus stearothermophilus [TaxId: 1422]
d2vmna_ : (ASP8) (LEU403) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Serine hydroxymethyltransferase |Bacillus stearothermophilus [TaxId: 1422]
d4o6zb_ : (ASP11) (VAL420) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d2w7ia_ : (PRO9) (ASP405) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Serine hydroxymethyltransferase |Bacillus stearothermophilus [TaxId: 1422]
d1bj4a_ : (VAL31) (GLY454) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Serine hydroxymethyltransferase |Human (Homo sapiens) [TaxId: 9606]
d2dkja_ : (GLU9) (PRO405) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.67