Protein Concepts Dictionary

Tableau information

Concept source:  d3kmqa_  amino acid (a.a.) range (LEU52)(PRO366)

nSSEs in this Concept: 24

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHEHEHHHHEHHHEEHEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LEU52)   (SER58) H1
	   (SER67)   (LEU89) H2
	   (SER97)  (LYS103) H3
	  (LEU119)  (GLY125) H4
	  (ARG127)  (ILE132) H5
	  (PRO141)  (ARG153) H6
	  (GLU154)  (LEU163) E7
	  (MET170)  (GLY176) H8
	  (ARG179)  (PRO185) E9
	  (PRO185)  (MET195) H10
	  (GLY197)  (SER205) H11
	  (ASN218)  (ASP222) H12
	  (ASP222)  (GLN232) H13
	  (ARG234)  (SER242) E14
	  (ALA243)  (HIS248) H15
	  (CYS249)  (GLU259) H16
	  (ASN270)  (THR281) H17
	  (THR281)  (GLU286) E18
	  (ASN287)  (GLU293) E19
	  (ALA302)  (HIS322) H20
	  (THR330)  (TYR336) E21
	  (ILE340)  (ASP345) E22
	  (ASP349)  (SER359) H23
	  (GLY361)  (PRO366) E24

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                                                                      
H2       80.2°   H2                                                                                                                                                               
H3      116.5°   90.2°   H3                                                                                                                                                        
H4      160.9°   81.1°  -67.4°   H4                                                                                                                                                 
H5      -52.3°  -68.6° -156.7°  116.2°   H5                                                                                                                                          
H6      -41.6° -121.7°  111.1°  157.1°  -74.8°   H6                                                                                                                                   
E7      121.9°   87.2°   -6.9°   60.8° -155.5° -117.9°   E7                                                                                                                            
H8      118.6° -127.6° -116.4°  -70.9°   85.2°   91.2° -113.8°   H8                                                                                                                     
E9      -80.4°  -72.1° -153.6°   90.1°   28.2°   95.0°  147.0°  -64.9°   E9                                                                                                              
H10      15.6°  -66.5°  107.4° -147.4°  -56.2°  -55.5° -111.6°  132.6°   83.8°   H10                                                                                                      
H11      74.0°   70.3°   44.4° -103.2° -115.9°   88.0°  -48.6°  157.8° -137.3°   63.1°   H11                                                                                               
H12      35.1°   87.8°  -82.5° -147.7°   87.1°  -45.9°  -88.6°  136.8°  115.3°   33.3°   44.6°   H12                                                                                        
H13      51.8°  124.9°  -89.3° -146.2°   95.0°   21.8°  -96.1°  101.0°  116.8°   61.2°   71.6°  -37.6°   H13                                                                                 
E14     143.2° -117.9°  -96.2°  -46.9°  102.1°  112.9°  -92.2°  -24.7°   76.2°  156.1° -140.6° -154.3°  116.9°   E14                                                                          
H15     -67.6° -113.2° -156.4° -117.1°   45.2°   55.0° -159.4°   51.6°   46.7°   81.1°  139.7°   95.2°   75.3°   75.8°   H15                                                                   
H16      53.3°  -37.1°  123.7°  108.2°  -33.3°  -91.8°  122.3° -113.6°  -48.8°   46.0°   88.6°   78.4°  105.1° -121.8°  -78.3°   H16                                                            
H17    -134.4°  133.4°  -49.6°  -63.4°  153.6°   97.5°  -50.0°   69.5°  132.8° -139.1°  -88.5° -105.8°  -82.9°   57.1° -109.7°  170.2°   H17                                                     
E18     166.2°   90.3°  -53.1°   16.6°  132.8°  146.2°  -47.0°  -75.1°  106.2° -151.0°  -93.5° -135.6° -130.4°  -50.4° -125.8°  122.0°  -48.8°   E18                                              
E19     -14.5°  -92.3°  108.9°  172.3°  -64.4°  -30.0°  115.2°  116.7°  -91.7°   25.8°   70.6°   26.8°   37.3°  140.8°  -69.2°  -67.8°  119.9°  161.9°   E19                                       
H20      50.8°  123.0°   88.5° -146.8°   95.1°   22.7°  -95.3°  103.1°  117.5°   59.8°   69.7°  -35.6°    2.1°  118.9°   76.7°  104.1°  -83.7° -130.8°   36.3°   H20                                
E21    -154.0°  -78.8°  -78.7°   11.5° -105.2°  156.0°   72.0°  -65.1°  -78.7° -144.6° -112.4° -156.8° -153.8°  -43.1° -107.5° -100.9°   71.6°   27.6° -168.5°  155.0°   E21                         
E22      26.8°   86.3°   90.7°  154.5°  -78.9°  -42.4°  -96.6°  133.3°  107.0°   26.5°   51.4°    8.3°   38.6°  154.7°   88.3°   72.4° -112.7° -143.7°   19.2°  -36.8°  161.6°   E22                  
H23     111.6° -106.8° -131.0°  -70.4°   67.3°   98.4° -126.3°  -22.3°   43.5°  121.6° -173.5°  141.9°  114.4°  -35.1°   46.7°   92.2°  -89.6°  -80.5°  115.7°  116.3°  -61.1°  134.9°   H23           
E24     -84.5°   62.9°   38.4°   90.4° -119.2° -101.6°   40.7°  154.5° -134.3°  -71.9°  -13.6°  -57.7°  -84.8°  131.8° -151.9°  -88.1°   86.9°   82.3°  -82.9°  -83.0°   99.2°  -64.0°  159.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3kmqa_ :    (LEU52)  (PRO366)   [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Foot-and-mouth disease virus - type c [TaxId: 12116]
 d3nmaa_ :    (PHE57)  (PRO366)   [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Foot-and-mouth disease virus - type c [TaxId: 12116]
 d3nl0a_ :    (LEU52)  (PRO366)   [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Foot-and-mouth disease virus - type c [TaxId: 12116]
 d3klva_ :    (PHE57)  (PRO366)   [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Foot-and-mouth disease virus - type c [TaxId: 12116]
 d1u09a_ :    (VAL51)  (PRO366)   [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Foot-and-mouth disease virus [TaxId: 12110]
 d3nkya_ :    (LEU52)  (PRO366)   [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Foot-and-mouth disease virus - type c [TaxId: 12116]
 d3knaa_ :    (PHE57)  (PRO366)   [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Foot-and-mouth disease virus - type c [TaxId: 12116]
 d2d7sa1 :    (PHE57)  (PRO366)   [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Foot-and-mouth disease virus [TaxId: 12110]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.8