Protein Concepts Dictionary

Tableau information

Concept source:  d1jiha2  amino acid (a.a.) range (SER63)(GLY380)

nSSEs in this Concept: 24

String of secondary struct.elems. (SSEs) defining this concept: HHEEEHEEHHHHEEHEHEHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (SER63)   (LYS68) H1
	   (THR76)   (SER85) H2
	   (ASN86)   (GLY98) E3
	  (PHE101)  (GLY107) E4
	  (ASP123)  (LEU128) E5
	  (GLU129)  (CYS146) H6
	  (ASP147)  (SER153) E7
	  (VAL157)  (GLY162) E8
	  (GLY162)  (MET170) H9
	  (LYS182)  (LEU187) H10
	  (ILE190)  (GLY196) H11
	  (PRO209)  (LEU215) H12
	  (LEU215)  (GLY219) E13
	  (GLY219)  (ASN223) E14
	  (TRP233)  (GLY257) H15
	  (GLY257)  (SER265) E16
	  (LYS268)  (TYR277) H17
	  (ALA282)  (LYS287) E18
	  (LEU291)  (CYS297) H19
	  (PHE305)  (VAL311) H20
	  (VAL311)  (ASP321) H21
	  (SER327)  (GLU333) H22
	  (ALA339)  (GLN352) H23
	  (THR367)  (GLY380) H24

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                                                                      
H2       70.9°   H2                                                                                                                                                               
E3     -131.3° -155.1°   E3                                                                                                                                                        
E4       38.5°  -41.1°  147.5°   E4                                                                                                                                                 
E5     -101.9°   59.6°  116.2°  -95.6°   E5                                                                                                                                          
H6     -112.2°   67.4°  105.9° -105.3°   10.7°   H6                                                                                                                                   
E7       49.0°  109.3°  -85.8°   68.2°  149.2°  157.7°   E7                                                                                                                            
E8     -114.0°   72.0°  102.1° -109.4°  -14.0°   -4.6°  156.7°   E8                                                                                                                     
H9     -102.7°  -39.6°  125.1°  -80.4°  -27.1°   30.7° -148.3°  -35.2°   H9                                                                                                              
H10      85.4°  101.9°  -92.3°  112.9°  -54.9°  -55.5°  106.0°  -52.4°  -81.7°   H10                                                                                                      
H11     141.5° -140.7°  -30.1° -177.6°  -86.8°  -76.9°  110.0°   72.9° -101.5°  -69.0°   H11                                                                                               
H12     -68.8°  -96.3°   84.6°   62.9°  155.8°  161.1°  -35.4°  165.2°  130.6° -141.3° -114.7°   H12                                                                                        
E13      61.0°  112.4°  -77.8°   72.6° -162.7° -171.7°  -14.0° -169.7°  151.4° -117.4°  105.3°  -24.5°   E13                                                                                 
E14      51.0°   89.5° -113.1°   82.3°  -71.4°  -77.6°   80.3°  -76.4°  -91.6°   34.4°   99.0° -113.3°  -94.1°   E14                                                                          
H15     -96.8°  -96.9°   71.8°  -78.9°  141.9°  138.4°  -63.0°  140.2°  116.2° -160.7°  -98.9°   29.7°   49.7°  142.9°   H15                                                                   
E16      83.0°   96.4°  -97.6°  108.4°  -51.0°  -52.7°  107.7°  -49.9°  -77.5°    5.5°   73.6° -143.0° -119.8°  -32.5°  165.9°   E16                                                            
H17     -54.1°   54.6° -124.5°  -24.9°  114.0°  121.9°  -60.8°  126.4°   92.2°  136.8° -153.0°  -42.1°  -59.2°  103.9°  -54.1°  132.7°   H17                                                     
E18      96.2°   95.5°  -93.0°  116.7°  -41.9°  -41.0°  121.2°  -37.6°  -69.0°  -15.2°   65.5° -156.5° -132.3°  -46.6°  164.4°   14.4°  141.5°   E18                                              
H19      49.9°  104.4°  -88.2°   63.6°  151.7°  161.8°   -7.9° -162.3°  143.9°  113.5° -114.4°  -28.1°  -11.2°   86.3°  -56.7° -114.9°   53.8° -128.6°   H19                                       
H20      57.6°  126.1°  -73.8°   85.8°  141.8° -144.9°   20.7° -141.7°  159.2°   89.4°   92.7°  -52.7°  -28.2°   71.0°  -75.9°   92.3°  -81.4°  104.2°  -28.3°   H20                                
H21     -55.6°   80.5° -120.0°  -81.0°   59.7°   66.6°  -91.1°   65.9°  -79.5°   32.1°  100.7° -122.2° -105.1°  -12.2° -151.8°   28.3° -104.7°   40.7°  -96.5°  -83.0°   H21                         
H22    -106.2°  -99.9°   85.3° -125.6°  -42.3°  -38.7°  126.8°  -34.5°  -68.8°  -22.7°   56.6°  160.3°  136.0°  -56.1°  154.9°  -23.6° -150.1°  -10.1° -134.7°  108.1°   50.8°   H22                  
H23      73.8°  142.1°  -57.5°  101.2° -143.4° -141.5°   33.5° -137.2° -170.0°  -88.6°  -77.1°   57.5°   34.7°   78.9°  -73.8°   92.7°   93.2°  101.7°   39.6°   16.4°   91.0°  102.9°   H23           
H24     -67.5°  -16.9°  147.9°  -31.1°   76.1°   83.4°  -96.9°   88.0°   53.9°  117.3° -149.8°  -79.7°  -97.5°   98.8°  -80.9°  111.7°  -38.5°  112.2°   90.9° -116.1°  -92.0° -116.9°  130.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3ohaa1 :    (SER63)  (GLY380)   [view usage] : e.8.1.7 |DNA/RNA polymerases |DNA/RNA polymerases |Lesion bypass DNA polymerase (Y-family), catalytic domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d3ohba1 :    (SER63)  (GLY380)   [view usage] : e.8.1.7 |DNA/RNA polymerases |DNA/RNA polymerases |Lesion bypass DNA polymerase (Y-family), catalytic domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1jiha2 :    (SER63)  (GLY380)   [view usage] : e.8.1.7 |DNA/RNA polymerases |DNA/RNA polymerases |Lesion bypass DNA polymerase (Y-family), catalytic domain |DNA polymerase eta |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d2r8ja2 :    (TYR64)  (ARG379)   [view usage] : e.8.1.7 |DNA/RNA polymerases |DNA/RNA polymerases |Lesion bypass DNA polymerase (Y-family), catalytic domain |DNA polymerase eta |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d2xgpa1 :    (TYR64)  (LYS373)   [view usage] : e.8.1.7 |DNA/RNA polymerases |DNA/RNA polymerases |Lesion bypass DNA polymerase (Y-family), catalytic domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.8