Protein Concepts Dictionary

Tableau information

Concept source:  d3undc_  amino acid (a.a.) range (SER0)(ILE268)

nSSEs in this Concept: 24

String of secondary struct.elems. (SSEs) defining this concept: EEEHEHHEHEHEHEEHEHEEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (SER0)    (SER6) E1
	    (VAL9)   (ASN13) E2
	   (PHE17)   (ILE23) E3
	   (ASP30)   (GLY47) H4
	   (PRO49)   (SER55) E5
	   (SER55)   (ARG61) H6
	   (LEU72)   (GLY87) H7
	   (VAL88)   (THR92) E8
	   (GLU96)  (GLU105) H9
	  (ASP108)  (PRO113) E10
	  (GLN119)  (ALA129) H11
	  (LYS131)  (LYS137) E12
	  (SER142)  (GLY157) H13
	  (ARG160)  (GLU165) E14
	  (ASP173)  (MET179) E15
	  (GLY181)  (GLY190) H16
	  (PRO193)  (ASP197) E17
	  (ASP197)  (LEU202) H18
	  (LEU202)  (PRO207) E19
	  (ALA211)  (ARG215) E20
	  (ARG215)  (VAL219) H21
	  (VAL219)  (GLY230) H22
	  (ALA232)  (ALA238) E23
	  (PRO254)  (ILE268) H24

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                                                                      
E2      165.6°   E2                                                                                                                                                               
E3       48.3° -117.6°   E3                                                                                                                                                        
H4     -126.8°   64.8°  159.0°   H4                                                                                                                                                 
E5       74.0°  -93.7°  -30.8°  158.3°   E5                                                                                                                                          
H6      121.7°  -45.1°  -73.8°  109.5°  -48.8°   H6                                                                                                                                   
H7      -90.2°  100.2°  130.1°  -36.8°  160.9°  141.8°   H7                                                                                                                            
E8      109.9°  -59.7°  -67.1°  123.2°  -37.0°   21.8°  159.8°   E8                                                                                                                     
H9       65.2° -125.7°  109.6°  -61.6°  138.9° -163.7°  -25.5°  174.1°   H9                                                                                                              
E10    -120.6°   45.4°  -72.3°  108.1°  -50.3°   -7.4°  137.6°  -28.2°  156.9°   E10                                                                                                      
H11      63.8° -129.5°  111.7°  -65.3°  136.5° -174.5°  -33.9°  160.3°  -15.1° -171.2°   H11                                                                                               
E12    -125.2°   40.9°  -80.9°   92.4°  -67.8°  -29.8°  115.6°  -51.3°  133.9°  -23.2° -148.2°   E12                                                                                        
H13      55.0° -135.0°   88.4° -104.0°   93.1°  128.1°  -86.3°  106.4°  -68.3°  134.5°  -54.2°  157.6°   H13                                                                                 
E14    -107.1°   60.5°  -70.4°   96.0°  -69.3°  -47.8°  106.4°  -66.8°  117.3°  -40.4°  132.4°  -22.4°  158.9°   E14                                                                          
E15    -114.1°   79.8° -162.0°  -22.8°  163.6°  124.1°  -34.8°  130.0°  -52.8°  125.2°  -50.4°  113.6°  -81.4° -118.8°   E15                                                                   
H16      88.1° -101.7°  110.9°  -87.9°   99.9°  109.7°  -90.1°   92.2°  -84.4°  117.1°  -69.5°  135.2°  -33.3°  157.1°  -67.2°   H16                                                            
E17     -71.1°   95.4°  -36.5°  124.9°  -50.8°  -64.7°  114.3°  -72.5°  108.0°  -59.1°  119.1°  -54.5°  122.5°  -36.9° -144.3°  147.1°   E17                                                     
H18     103.8°  -61.7°  -56.6°  117.7°  -43.3°  -25.9°  135.5°  -39.5°  143.3°  -20.0°  157.1°  -25.4°  136.3°  -29.1° -138.8°  131.7°  -39.0°   H18                                              
E19      88.7°  -77.9°   41.2°  140.9°  -18.2°  -33.0°  158.1°  -28.9°  149.5°  -33.0°  152.5°  -49.7°  110.6°  -53.4° -156.9°  111.7°   45.1°  -25.6°   E19                                       
E20    -118.5°   69.3° -139.3°   19.7° -151.3°  109.2°  -32.7°  128.3°  -57.5°  105.4°  -66.4°   84.9° -115.4°   82.1°  -38.9° -106.0° -106.2°  108.4°  134.0°   E20                                
H21     -94.5°   99.1° -142.4°  -37.1° -162.8°  143.8°  -24.4°  147.2°  -34.4°  144.3°  -30.8°  129.1°  -69.7°  127.3°   19.7°  -66.4° -138.2°  153.9°  176.1°   45.8°   H21                         
H22    -117.1°   76.6°  150.4°  -49.4°  131.4°  110.0°  -65.4°  105.0°  -75.4°  114.9°  -65.8°  117.5°  -65.8°  134.7°   32.5°  -39.6°  171.6°  134.9°  133.5°   68.7°  -42.8°   H22                  
E23      48.3° -117.6°  -20.2°  138.9°  -47.6°  -80.3°  113.6°  -80.4°   97.8°  -76.4°  104.5°  -76.9°   99.3°  -60.3° -148.4°  127.5°  -23.4°  -57.2°   51.7° -119.2° -132.2° -165.0°   E23           
H24    -139.6°   54.9°  168.6°  -30.2°  137.8°   96.8°  -61.2°  101.8°  -81.3°   99.2°  -77.9°   94.1°  -92.7°  108.1°  -28.5°  -65.8°  144.7°  116.6°  128.6°   49.3°   47.7°  -27.1°  166.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3undc_ :     (SER0)  (ILE268)   [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |automated matches |Burkholderia pseudomallei [TaxId: 320372]
 d3unda_ :    (GLY-1)  (ILE268)   [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |automated matches |Burkholderia pseudomallei [TaxId: 320372]
 d3tmqc_ :     (SER0)  (MET275)   [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |automated matches |Burkholderia pseudomallei [TaxId: 320372]
 d3undb_ :    (GLY-1)  (ILE268)   [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |automated matches |Burkholderia pseudomallei [TaxId: 320372]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1