Protein Concepts Dictionary

Tableau information

Concept source:  d4neab_  amino acid (a.a.) range (LYS45)(VAL356)

nSSEs in this Concept: 23

String of secondary struct.elems. (SSEs) defining this concept: HHHHEEEHHEHEHEHEEHEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LYS45)   (GLY62) H1
	   (THR68)   (ARG87) H2
	   (GLU88)   (GLY99) H3
	  (LEU102)  (LYS125) H4
	  (GLY127)  (SER133) E5
	  (ASP137)  (PRO146) E6
	  (VAL150)  (TRP156) E7
	  (LEU160)  (LYS166) H8
	  (ALA168)  (GLY174) H9
	  (VAL178)  (SER182) E10
	  (THR188)  (GLY200) H11
	  (THR205)  (GLY211) E12
	  (GLY213)  (SER221) H13
	  (ASP227)  (GLY233) E14
	  (ILE235)  (ALA246) H15
	  (ASN251)  (GLY257) E16
	  (ASN260)  (PHE265) E17
	  (PHE270)  (TYR282) H18
	  (SER293)  (GLN298) E19
	  (LYS302)  (ILE316) H20
	  (GLU327)  (SER333) E21
	  (SER333)  (GLY351) H22
	  (GLY351)  (VAL356) E23

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                                                               
H2      135.7°   H2                                                                                                                                                        
H3     -147.4°  -71.9°   H3                                                                                                                                                 
H4      -33.4° -167.8°  120.3°   H4                                                                                                                                          
E5      -58.2° -147.3°  -89.2°   41.0°   E5                                                                                                                                   
E6      143.5°   21.6°   68.9° -156.9°  157.7°   E6                                                                                                                            
E7      134.1°  -17.2°  -65.8°  164.3°  130.2°  -36.9°   E7                                                                                                                     
H8      -35.0° -170.5°  117.4°    3.6°  -37.4° -159.8°  162.7°   H8                                                                                                              
H9       35.4°  150.3°  130.8°  -20.2°  -61.1° -137.3° -162.9°   23.7°   H9                                                                                                       
E10    -142.7°  -27.1°  -52.4°  161.4°  121.0°  -41.4°  -13.8°  158.1° -176.7°   E10                                                                                               
H11      29.8°  131.2° -151.1°  -37.2°  -76.6° -124.9°  141.7°  -40.7°  -21.2°  155.5°   H11                                                                                        
E12    -170.2°  -44.3°   28.2°  147.7°  116.1°  -41.6°  -41.8°  145.2°  151.5°  -31.0° -160.0°   E12                                                                                 
H13     -29.3° -162.6° -119.6°   13.2°  -32.8°  168.6° -151.4°   11.4°   31.6° -149.3°   44.0°  147.7°   H13                                                                          
E14     130.6°  -23.2°  -65.9°  158.5°  124.4°  -43.1°   -6.2°  156.6°  163.2°  -13.7°  142.5°  -44.2° -145.5°   E14                                                                   
H15     -60.1°  154.6°  102.5°  -29.1°  -54.2°  133.0°  165.8°  -29.6°  -28.4°  154.7°  -48.8°  124.5°  -40.8°  168.4°   H15                                                            
E16     126.6°  -25.1°  -69.2°  155.1°  123.3°  -45.7°   -9.2°  153.6°  159.6°  -17.3°  139.5°  -48.1° -142.2°   -4.0° -171.8°   E16                                                     
E17      80.9°  -74.5°  -94.8°  103.6°   80.9°  -96.1°  -60.7°  102.1°  115.6°  -63.2°  107.4°  -90.5°   90.8°  -54.9° -130.9°  -51.5°   E17                                              
H18     108.6°   99.3°   75.7°  -84.0° -101.6°   77.9°  111.7°  -85.1°  -73.6°  107.8°  -82.5°   79.8°   96.4° -117.2°   55.7° -120.8° -170.1°   H18                                       
E19     -78.9°  -88.4°  -86.7°   93.0°   63.4° -109.2°  -72.3°   90.6°  109.3°  -70.5°  108.4°   91.5°  -79.8°  -66.2° -116.5°  -63.5°  -19.2° -157.3°   E19                                
H20     103.9°   68.3° -103.2° -105.9° -143.7°  -51.3°  -85.5°  109.1°   86.0°  -92.7°   76.4°  -85.2°  117.5°  -91.5°   89.7°  -92.9°  130.5°  -51.1°  149.6°   H20                         
E21    -108.9°  112.5°   58.3°  -76.2°  -76.7°   94.5° -117.0°  -75.5°   76.2°  106.6°  -93.5°   75.7°  -84.9° -119.9°   48.9° -123.8° -144.8°   30.4° -127.1°  -81.2°   E21                  
H22    -106.2°  -82.9°  -53.0°  104.9°   64.5°  -97.3°  -66.1°  101.4°  125.1°  -56.7°  135.0°   64.3°  -94.0°  -60.9°  114.2°  -60.7°  -46.9°  125.4°  -34.0° -148.2°   98.5°   H22           
E23      80.0°  -61.8° -132.1°  106.1°  137.3°  -63.6°  -72.9°  109.3°   90.4°  -86.5°   69.7° -104.0°  108.3°  -75.6°  113.5°   73.8°   84.9°  -99.3°  103.2°  -49.2° -129.6° -127.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4a0ma_ :    (ARG60)  (TYR358)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Spinach (Spinacia oleracea) [TaxId: 3562]
 d2onma_ :    (SER74)  (CYS369)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Human (Homo sapiens), mitochondrial [TaxId: 9606]
 d4h73g_ :    (LEU59)  (LEU354)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pyrobaculum sp. [TaxId: 1104324]
 d4neab_ :    (LYS45)  (VAL356)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
 d4nu9b_ :    (LYS45)  (VAL356)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
 d4qjeb_ :    (LYS45)  (VAL356)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
 d4h73b_ :    (ARG45)  (LEU354)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pyrobaculum sp. [TaxId: 1104324]
 d3ed6a_ :    (LYS45)  (VAL356)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
 d4neaa1 :    (THR44)  (VAL356)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
 d4nu9a_ :    (LYS45)  (VAL356)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.82