Protein Concepts Dictionary

Tableau information

Concept source:  d2emra_  amino acid (a.a.) range (MET1)(VAL263)

nSSEs in this Concept: 23

String of secondary struct.elems. (SSEs) defining this concept: EHHEHEHHHEHHEHEHEHEEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (MET1)    (GLY9) E1
	   (ASP12)   (THR17) H2
	   (LEU21)   (CYS27) H3
	   (TYR29)   (TYR35) E4
	   (THR43)   (ILE51) H5
	   (GLU54)   (SER59) E6
	   (SER59)   (VAL63) H7
	   (VAL63)   (PHE67) H8
	   (VAL71)   (LYS76) H9
	   (ASP79)   (PRO85) E10
	   (ASP87)   (THR92) H11
	   (THR92)  (GLY105) H12
	  (GLU107)  (HIS112) E13
	  (TYR117)  (THR123) H14
	  (LYS132)  (TYR138) E15
	  (SER147)  (GLY159) H16
	  (LEU160)  (LEU166) E17
	  (ALA178)  (MET191) H18
	  (VAL203)  (ARG208) E19
	  (PRO214)  (GLY219) E20
	  (PRO233)  (VAL238) E21
	  (ILE244)  (GLY255) H22
	  (PRO257)  (VAL263) H23

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                                                               
H2      121.7°   H2                                                                                                                                                        
H3     -136.8°  101.5°   H3                                                                                                                                                 
E4      -39.3°  115.7° -121.9°   E4                                                                                                                                          
H5      127.6°  -41.8°  -84.9°  151.2°   H5                                                                                                                                   
E6      -76.6°   94.8°  100.2°  -37.6°  135.8°   E6                                                                                                                            
H7     -131.7°  -16.9°   89.9° -113.4°   51.2°  -84.8°   H7                                                                                                                     
H8     -161.5°  -47.0°   57.4° -152.7°  -33.9°  115.9°  -42.8°   H8                                                                                                              
H9      129.3°  -45.5°   81.3° -155.4°   -4.4° -138.7°  -53.9°  -32.5°   H9                                                                                                       
E10     -20.6°  121.4° -130.7°  -18.7°  143.4°  -56.3° -124.7° -167.6° -146.3°   E10                                                                                               
H11      78.7°  102.6°  -91.6°   39.6° -141.7°  -10.5°  -90.8° -116.2° -143.7°   58.1°   H11                                                                                        
H12    -171.6°  -55.9°   46.8°  148.7°  -44.6°  111.2°   48.5°  -11.3°  -42.6°  167.4° -109.6°   H12                                                                                 
E13     -11.7°  115.9° -141.3°  -50.1°  116.1°  -86.8° -128.7°  150.1°  117.7°  -31.7°  -89.7° -159.9°   E13                                                                          
H14     -18.9°  106.1° -150.5°  -53.1°  109.2°  -87.7° -119.2°  142.8°  111.3°  -36.0°  -92.2° -153.7°   -9.7°   H14                                                                   
E15      80.6° -156.3°  -56.5°   75.4° -132.8°  -81.9° -140.5° -113.6°  128.4°   76.2°  -71.9° -103.3°   87.5°   97.2°   E15                                                            
H16     -68.6°   54.8°  152.7°  -83.7°   68.3°   95.7°   69.4°   95.6°   72.1°  -76.7°  105.9°  106.5°  -61.2°  -51.5° -148.8°   H16                                                     
E17     107.2° -130.4°  -31.0° -107.2° -101.4° -105.0° -120.7°   83.6°   97.1°  107.3°  -94.5°   74.5°  110.3°  119.5°  -31.9° -157.5°   E17                                              
H18     -83.9°  -79.0°  104.7°   47.6° -120.4°   15.9°  -69.8° -105.1° -123.6°  -65.0°   25.1°  102.8°  -92.4°  -90.6°   97.0°  -85.3°  116.7°   H18                                       
E19     122.1°   95.7°  -47.5° -148.6°   56.9° -147.5°   97.0°   54.8°   52.6° -137.3° -138.1°   52.9°  115.5°  118.4°  -76.2°  115.4°  -46.7°  150.6°   E19                                
E20     -53.5°  -93.4°  128.3°   22.6° -132.3°   28.7°  -91.1° -132.3° -136.7°   36.1°   36.7° -132.6°  -61.7°  -60.5°   94.6°  -71.7°  124.8°  -30.7°  170.7°   E20                         
E21     -66.3°   66.3°  140.5°   49.7° -103.5°   47.6°  -68.2° -110.9° -107.8°   56.7°   57.9° -116.1°  -69.1°  -63.0°  123.5°  -48.2°  152.1°  -37.9°  160.3°  -28.9°   E21                  
H22     -75.9°  150.1°  -66.0°  -93.3°  108.5° -113.6°  151.3°  108.5°  104.7°  -83.9° -104.7°  103.0°   76.3°   84.7°  -34.7° -126.6°   35.6° -129.5°   55.4° -115.8° -140.5°   H22           
H23    -110.4°  -18.3°  110.9°   97.7°  -59.8°   77.9°  -21.3°  -62.3°  -63.6°  105.4°   86.5°  -69.3° -107.8°  -98.5°  153.7°   51.2° -141.9°   62.0° -113.7°   75.3°   49.0° -168.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2e07a_ :     (MET1)  (VAL263)   [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Pyrococcus horikoshii [TaxId: 53953]
 d2emra_ :     (MET1)  (VAL263)   [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Pyrococcus horikoshii [TaxId: 53953]
 d2pcha_ :     (MET1)  (VAL263)   [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Pyrococcus horikoshii [TaxId: 53953]
 d2ek4a_ :     (MET1)  (VAL263)   [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Pyrococcus horikoshii [TaxId: 53953]
 d2ekaa_ :     (MET1)  (VAL263)   [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Pyrococcus horikoshii [TaxId: 53953]
 d2e8ra_ :     (MET1)  (VAL263)   [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Pyrococcus horikoshii [TaxId: 53953]
 d2pcga_ :     (MET1)  (VAL263)   [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Pyrococcus horikoshii [TaxId: 53953]
 d2p5ca_ :     (MET1)  (VAL263)   [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Pyrococcus horikoshii [TaxId: 53953]
 d2p6ka_ :     (MET1)  (VAL263)   [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Pyrococcus horikoshii [TaxId: 53953]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.90