Protein Concepts Dictionary

Tableau information

Concept source:  d2clpa_  amino acid (a.a.) range (ALA40)(VAL351)

nSSEs in this Concept: 23

String of secondary struct.elems. (SSEs) defining this concept: EHHEHEHEHEHEHHHEHHHHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ALA40)   (MET46) E1
	   (GLU47)   (MET52) H2
	   (ASP53)   (GLY68) H3
	   (THR70)   (THR74) E4
	   (GLN82)   (LEU90) H5
	  (VAL101)  (ALA107) E6
	  (PRO117)  (GLN132) H7
	  (ASP137)  (LEU141) E8
	  (GLU151)  (GLY164) H9
	  (GLU168)  (ASN173) E10
	  (ALA175)  (ASN189) H11
	  (THR195)  (GLY199) E12
	  (ASN202)  (ARG206) H13
	  (ARG206)  (GLU211) H14
	  (PHE213)  (PHE219) H15
	  (ARG222)  (ASN227) E16
	  (LYS239)  (ASP244) H17
	  (TRP257)  (ASN263) H18
	  (LYS267)  (GLY286) H19
	  (SER291)  (TYR301) H20
	  (ALA313)  (SER319) E21
	  (LEU321)  (GLU333) H22
	  (PRO338)  (VAL351) H23

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                                                               
H2       59.3°   H2                                                                                                                                                        
H3     -177.6°  123.1°   H3                                                                                                                                                 
E4      -30.6°   81.5°  147.7°   E4                                                                                                                                          
H5      122.2°   92.8°  -58.7° -148.5°   H5                                                                                                                                   
E6      -51.4°  -97.7°  126.8°  -20.8° -159.1°   E6                                                                                                                            
H7       96.9°   52.2°  -85.1°  126.9°  -40.7°  147.1°   H7                                                                                                                     
E8      -61.1°   92.4°  117.9°  -33.1° -174.7°  -18.9°  144.5°   E8                                                                                                              
H9      106.7°   85.3°  -74.0°  133.4°  -15.5°  148.4°  -36.6°  166.4°   H9                                                                                                       
E10     -65.3°   66.2°  115.2°  -51.7°  151.1°  -49.2°  114.4°  -32.9°  150.7°   E10                                                                                               
H11     107.4° -135.6°  -71.0°  107.5°  -56.6°  104.2°  -93.0°  119.1°  -56.5°  151.9°   H11                                                                                        
E12     -60.0°   38.9°  121.6°  -62.7°  127.3°  -69.6°   87.7°  -57.6°  123.4°  -27.5°  167.4°   E12                                                                                 
H13     102.3°  134.6°  -75.9°   71.7° -128.5°   50.9° -159.5°   46.5° -139.3°   68.4°  -88.1°   95.7°   H13                                                                          
H14     124.3° -173.4°  -53.2°   99.9°  -89.2°   82.3° -129.2°   85.5°  -98.1°  109.6°  -50.2°  136.3°  -41.4°   H14                                                                   
H15     115.8° -129.7°  -63.0°  120.0°  -44.1°  117.1°  -82.2°  131.4°  -45.9°  163.3°   13.0° -168.5°  -95.7°  -55.1°   H15                                                            
E16     -46.6°   25.4°  135.4°  -59.9°  118.2°  -73.4°   77.6°  -67.1°  109.8°  -43.3°  149.5°  -19.4°  110.8°  152.1°  150.2°   E16                                                     
H17      14.4°   73.3° -163.3°  -26.6°  122.2°  -45.7°  105.8°  -59.7°  107.0°  -72.4°   95.4°  -72.4°  -94.5° -110.7°  105.2°   60.6°   H17                                              
H18    -135.4° -110.3°   44.6°  110.6° -100.5°   92.7° -109.1°   77.5° -115.8°   71.0° -106.6°  -84.9°   51.3°   63.1° -103.4° -103.8° -137.2°   H18                                       
H19    -136.5°  -79.4°   45.8° -159.3°   41.3°  158.9°  -42.2°  140.0°  -52.7°  112.2°  -91.8°  -97.1°  117.4°   98.2°  -79.0°  -99.6°  147.6°   69.2°   H19                                
H20     125.7° -173.3°  -51.9°  104.9°  -80.6°   89.0° -121.1°   94.1°  -88.6°  119.4°  -40.8°  146.1°   51.0°    9.8°  -45.3°  161.2° -111.4°   69.7°   94.5°   H20                         
E21     -35.6°   24.1°  146.8°  -61.3°  103.5°  -80.4°   66.8°  -81.5°   91.4°  -65.6°  125.4°  -43.9°  128.0°  159.9°  125.9°  -24.6°   49.4° -127.7° -101.7°  159.7°   E21                  
H22     160.9°  128.6°  -17.9°  130.5°  -76.5°  109.8° -100.8°  100.0°  -91.8°  100.5°  -78.8°  113.5°  -59.3°  -46.0°  -74.0°  131.2° -153.0°   29.8°   59.4°  -48.5°  151.8°   H22           
H23      44.4°   97.4° -133.5°   16.0° -148.3°  -11.9°  141.2°  -30.5°  136.5°   58.4°   96.7°   75.3°  -58.6°  -83.9°  109.6°   75.2°  -36.0°  103.8°  170.3°  -89.0°   77.1° -117.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1gvea_ :     (ALA7)  (VAL318)   [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Aflatoxin aldehyde reductase (akr7a1) |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2bp1a_ :    (ALA40)  (VAL351)   [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2clpi_ :    (PRO39)  (VAL351)   [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2clpa_ :    (ALA40)  (VAL351)   [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1