Protein Concepts Dictionary

Tableau information

Concept source:  d2exka2  amino acid (a.a.) range (LYS3)(SER318)

nSSEs in this Concept: 23

String of secondary struct.elems. (SSEs) defining this concept: EEEEEHEEEEEEEEEEEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LYS3)    (PRO7) E1
	   (SER17)   (GLY22) E2
	   (ASP23)   (GLU33) E3
	   (VAL38)   (LYS44) E4
	   (LYS47)   (LEU51) E5
	   (PRO68)   (TRP74) H6
	   (TRP74)   (TYR80) E7
	   (LYS84)   (VAL94) E8
	  (ASP101)  (ASP110) E9
	  (ASP118)  (ASN123) E10
	  (ASP128)  (ASP134) E11
	  (ARG138)  (ARG149) E12
	  (GLY157)  (GLU162) E13
	  (GLU173)  (PHE178) E14
	  (GLY188)  (LYS193) E15
	  (TYR198)  (ALA203) E16
	  (ALA212)  (SER218) E17
	  (PRO224)  (ASP230) E18
	  (HIS249)  (HIS254) E19
	  (GLU259)  (LEU270) E20
	  (GLU289)  (ASP299) E21
	  (GLY300)  (VAL304) E22
	  (LEU312)  (SER318) E23

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                                                               
E2      146.1°   E2                                                                                                                                                        
E3       16.2°  158.5°   E3                                                                                                                                                 
E4      175.0°  -37.9°  158.8°   E4                                                                                                                                          
E5       44.7°  103.3°  -55.4°  137.5°   E5                                                                                                                                   
H6     -137.4°   25.9°  153.3°  -47.6°  108.2°   H6                                                                                                                            
E7      142.2°   11.8°  157.8°  -42.6°  104.1°   14.4°   E7                                                                                                                     
E8      -29.7° -173.8°  -15.8°  145.9°  -71.2°  157.7°  170.0°   E8                                                                                                              
E9      141.7°  -14.9°  148.4°  -40.8°   97.0°  -40.8°  -26.4°  159.8°   E9                                                                                                       
E10     -71.1°  126.6°  -69.9°  108.8° -110.9°  102.5°  116.5°  -59.2°  140.8°   E10                                                                                               
E11     136.5°   28.5°  152.1°  -48.5°  109.2°   -2.7°   17.0°  155.3°  -43.3°   99.9°   E11                                                                                        
E12     -39.6°  174.0°  -26.3°  136.2°  -81.6°  155.6°  169.8°  -10.5°  162.9°  -53.3°  152.9°   E12                                                                                 
E13     107.3°  -39.0°  121.7°  -76.9°   67.7°  -41.7°  -36.6°  136.9°  -41.5°  126.3°  -43.3°  146.9°   E13                                                                          
E14    -111.8°  101.6°  -96.6°   63.8° -143.9°  105.7°  105.6°  -82.2°  100.5°  -72.9°  105.2°  -72.5°  140.6°   E14                                                                   
E15     140.7°   30.1°  155.4°  -44.2°  115.4°    7.7°  -19.7°  154.8°  -45.0°   96.9°    6.3°  150.1°  -49.4°   99.1°   E15                                                            
E16     -57.3°  137.7°  -42.3°  117.8°  -76.6°  163.0°  149.5°  -39.2°  123.4°  -90.5°  165.0°  -39.6°  135.4°  -67.4°  162.0°   E16                                                     
E17     108.3°  -57.2°  122.5°  -76.5°   97.0°  -32.5°  -45.4°  125.5°  -71.0°   78.5°  -30.5°  126.2°  -50.2°  118.5°  -32.9°  164.5°   E17                                              
E18    -116.7°   91.3° -100.6°   58.3° -128.7°  105.9°   99.5°  -90.1°   84.8°  -97.7°  106.6°  -82.9°  125.9°  -25.3°  101.7°  -60.9°  130.9°   E18                                       
E19     153.3°  -10.6°  168.1°  -31.4°  112.9°   21.0°   11.3°  175.7°  -23.8°  117.0°   23.1°  165.5°  -46.6°   94.8°   22.6°  142.0°  -53.5°   88.3°   E19                                
E20     -49.1°  147.6°  -33.4°  126.0°  -74.6°  172.9°  159.4°  -29.2°  133.1°  -82.3°  174.5°  -30.1°  138.7°  -70.4° -169.3°   10.0°  154.6°  -67.9°  151.9°   E20                         
E21    -123.4°  -65.2°  129.3°  -59.4°  132.0°  -42.8°  -55.8°  120.5°  -79.6°   61.3°  -40.4°  114.1°  -80.4°   82.4°  -36.2°  144.2°  -36.3°   98.9°  -55.8°  139.8°   E21                  
E22     -77.0°  114.9°  -63.7°   98.5°  -82.2°  140.0°  126.6°  -62.2°  100.8° -109.6°  142.3°  -62.0°  122.6°  -63.6°  140.7°  -23.0°  171.7°  -47.6°  119.2°  -33.0°  145.7°   E22           
E23     127.1°  -20.4° -142.1°  -57.3°   88.2°   23.6°   16.0° -156.7°  -28.9°  122.6°   25.8° -165.5°  -20.6°  121.0°   31.1° -146.8°   44.8°  111.6°   26.3° -154.0°   66.0° -126.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2exia2 :     (LYS3)  (SER318)   [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |Beta-D-xylosidase N-terminal domain |Geobacillus stearothermophilus [TaxId: 1422]
 d2exha2 :     (LYS3)  (SER318)   [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |Beta-D-xylosidase N-terminal domain |Geobacillus stearothermophilus [TaxId: 1422]
 d2exka2 :     (LYS3)  (SER318)   [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |Beta-D-xylosidase N-terminal domain |Geobacillus stearothermophilus [TaxId: 1422]
 d1yrza2 :  (ARG1004) (ASP1312)   [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |Beta-D-xylosidase N-terminal domain |Bacillus halodurans [TaxId: 86665]
 d2exja2 :     (LYS3)  (SER318)   [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |Beta-D-xylosidase N-terminal domain |Geobacillus stearothermophilus [TaxId: 1422]
 d1yifa2 :     (LYS2)  (VAL304)   [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |Beta-D-xylosidase N-terminal domain |Bacillus subtilis [TaxId: 1423]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.67