Tableau information
Concept source: d3gvdf_ amino acid (a.a.) range (SER2)(GLY238)
nSSEs in this Concept: 22
String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHHEEEEEEEEEEEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER2) (CYS23) H1
(LEU27) (HIS38) H2
(GLY42) (ALA54) H3
(PRO59) (ASP74) H4
(HIS76) (LEU90) H5
(LYS97) (LEU103) H6
(LYS106) (ASP124) H7
(LYS126) (VAL138) H8
(GLY141) (HIS145) E9
(ALA148) (CYS152) E10
(GLY153) (HIS158) E11
(GLY161) (THR167) E12
(THR167) (GLU171) E13
(VAL174) (GLN178) E14
(LEU182) (GLY186) E15
(PRO194) (GLU198) E16
(GLY199) (GLY203) E17
(ALA206) (GLY210) E18
(ASN211) (GLY215) E19
(GLY217) (GLY221) E20
(GLY223) (LEU227) E21
(HIS233) (GLY238) E22
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -159.5° H2
H3 59.9° 133.9° H3
H4 -153.6° -29.1° 139.9° H4
H5 58.7° -130.6° 81.9° 101.6° H5
H6 -89.3° 98.1° -38.3° 116.7° 119.0° H6
H7 -135.4° 44.3° -92.5° 69.3° 157.9° -54.6° H7
H8 40.5° -146.1° 74.2° -118.3° -18.2° 112.4° -165.9° H8
E9 -162.9° 22.2° -111.8° 42.0° 137.7° -77.5° -27.6° -155.8° E9
E10 83.1° -85.2° 140.9° -72.4° 67.3° -165.2° -124.9° 69.1° -107.2° E10
E11 -31.8° 164.3° 30.4° 154.9° -59.8° 66.6° 121.0° -47.1° 142.2° -110.5° E11
E12 -156.9° 27.8° -106.1° 48.5° 141.8° -71.1° -21.5° -159.4° 6.5° 113.0° -136.5° E12
E13 90.3° -80.6° 144.2° -64.2° 64.7° -175.0° -123.3° 70.1° -101.9° 10.6° 114.9° -108.1° E13
E14 -30.7° 160.3° 29.2° 162.2° -67.0° 62.5° 116.0° -53.1° 139.7° -112.7° -7.9° 133.5° -118.4° E14
E15 -109.5° 84.0° -50.3° 94.3° -114.6° -26.6° 48.8° -117.2° 61.8° 166.5° -80.5° 56.6° 156.6° 79.3° E15
E16 97.1° -70.2° 155.9° -59.9° 79.6° -160.6° -110.3° 83.6° -92.3° 15.1° 125.5° -97.9° 15.0° 127.3° -153.4° E16
E17 -37.1° 161.1° 28.4° 148.9° -57.4° 66.1° 120.6° -46.5° 139.1° -112.7° -6.3° 134.0° -116.0° 13.4° 77.4° -127.8° E17
E18 -140.8° 46.8° -87.2° 65.5° 142.4° -52.4° -15.5° -153.4° 25.2° 131.9° -117.5° 19.0° 127.1° -114.6° -38.6° 116.8° 115.3° E18
E19 93.3° -80.9° 140.8° -60.4° 59.1° 174.9° -125.1° 67.4° -100.8° 19.9° 114.0° -107.2° 9.8° 118.7° 148.6° -23.0° 113.9° 125.6° E19
E20 -39.3° 159.0° 26.7° 147.5° -58.0° 64.7° 119.1° -47.8° 137.1° -114.6° -8.2° 132.0° -117.5° 14.7° 75.4° -129.7° -2.2° 113.5° 115.1° E20
E21 -152.3° 41.2° -93.7° 53.6° 130.7° -63.2° -28.0° -145.7° 19.6° 124.4° -123.7° 16.6° 117.4° -122.7° -43.4° 110.0° -119.9° -14.8° 113.9° 117.8° E21
E22 -50.3° 145.2° 11.8° 145.2° -71.2° 49.9° 104.2° -62.5° 123.0° -129.3° -19.3° 117.6° -132.4° -20.0° 61.2° -144.4° -16.6° 98.8° -129.5° -14.9° 104.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4h7oa_ : (ALA5) (GLY238) [view usage] : b.81.1.6 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Serine acetyltransferase |automated matches |Vibrio cholerae [TaxId: 243277]
d3gvdh_ : (LEU27) (GLY238) [view usage] : b.81.1.6 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Serine acetyltransferase |automated matches |Yersinia pestis [TaxId: 632]
d3gvdd_ : (SER2) (GLY238) [view usage] : b.81.1.6 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Serine acetyltransferase |automated matches |Yersinia pestis [TaxId: 632]
d3gvde_ : (LEU27) (GLY238) [view usage] : b.81.1.6 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Serine acetyltransferase |automated matches |Yersinia pestis [TaxId: 632]
d4n69a_ : (ASP15) (GLY249) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Soybean (Glycine max) [TaxId: 3847]
d4hzda_ : (LEU13) (HIS242) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Brucella abortus [TaxId: 430066]
d3gvdc_ : (SER2) (GLY238) [view usage] : b.81.1.6 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Serine acetyltransferase |automated matches |Yersinia pestis [TaxId: 632]
d3gvdf_ : (SER2) (GLY238) [view usage] : b.81.1.6 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Serine acetyltransferase |automated matches |Yersinia pestis [TaxId: 632]
d1ssma_ : (THR2) (GLY234) [view usage] : b.81.1.6 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Serine acetyltransferase |Serine acetyltransferase |Haemophilus influenzae [TaxId: 727]
d3gvdi_ : (GLU24) (GLY238) [view usage] : b.81.1.6 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Serine acetyltransferase |automated matches |Yersinia pestis [TaxId: 632]
d1ssqa_ : (ASN2) (GLY234) [view usage] : b.81.1.6 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Serine acetyltransferase |Serine acetyltransferase |Haemophilus influenzae [TaxId: 727]
d1t3da_ : (LEU27) (GLY238) [view usage] : b.81.1.6 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Serine acetyltransferase |Serine acetyltransferase |Escherichia coli [TaxId: 562]
d1ssqd_ : (ASP4) (GLY234) [view usage] : b.81.1.6 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Serine acetyltransferase |Serine acetyltransferase |Haemophilus influenzae [TaxId: 727]
d3gvdb_ : (SER3) (GLY238) [view usage] : b.81.1.6 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Serine acetyltransferase |automated matches |Yersinia pestis [TaxId: 632]
d4n6aa_ : (ASP15) (GLY249) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Soybean (Glycine max) [TaxId: 3847]
d3gvda_ : (ALA28) (GLY238) [view usage] : b.81.1.6 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Serine acetyltransferase |automated matches |Yersinia pestis [TaxId: 632]
d3gvdk_ : (HIS32) (GLY238) [view usage] : b.81.1.6 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Serine acetyltransferase |automated matches |Yersinia pestis [TaxId: 632]
d1s80a_ : (SER0) (GLY234) [view usage] : b.81.1.6 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Serine acetyltransferase |Serine acetyltransferase |Haemophilus influenzae [TaxId: 727]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.81