Protein Concepts Dictionary

Tableau information

Concept source:  d2vw8a_  amino acid (a.a.) range (ASP13)(ARG267)

nSSEs in this Concept: 22

String of secondary struct.elems. (SSEs) defining this concept: EEEHHEHHEHHEEEEEHEEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ASP13)   (GLY18) E1
	   (PRO23)   (LEU29) E2
	   (ALA32)   (GLU38) E3
	   (ALA45)   (TRP55) H4
	   (ASP58)   (HIS63) H5
	   (HIS63)   (HIS69) E6
	   (HIS71)   (LEU81) H7
	   (LEU81)   (PRO86) H8
	   (ASN87)   (SER93) E9
	   (SER93)  (SER102) H10
	  (SER102)  (LEU117) H11
	  (PRO133)  (ASP139) E12
	  (GLU141)  (GLY146) E13
	  (ARG148)  (GLY158) E14
	  (ASP162)  (ASP168) E15
	  (ARG172)  (GLY177) E16
	  (MET198)  (GLN209) H17
	  (LEU215)  (GLY220) E18
	  (GLY223)  (GLY227) E19
	  (GLY227)  (GLY233) H20
	  (GLY233)  (GLY255) H21
	  (SER257)  (ARG267) H22

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                                                        
E2      154.4°   E2                                                                                                                                                 
E3      -48.5°  152.3°   E3                                                                                                                                          
H4      152.2°  -26.0°  151.6°   H4                                                                                                                                   
H5     -111.8°   85.7°  -66.6°   95.5°   H5                                                                                                                            
E6      -60.8°  141.1°  -12.3°  140.4°   55.7°   E6                                                                                                                     
H7       95.9°  -59.1°  141.9°  -66.4° -133.8° -153.0°   H7                                                                                                              
H8      141.6°  -13.4° -163.4°  -29.3°  -98.0° -153.7°  -45.8°   H8                                                                                                       
E9      -82.9°  118.4°  -34.7°  121.2°   33.6°  -22.7° -159.9° -131.2°   E9                                                                                                
H10      30.3° -124.2°   75.2° -131.9° -126.0°   87.2°  -67.1° -111.9°  106.8°   H10                                                                                        
H11     -73.0° -108.6°   92.5°   84.7°  134.3°   97.1°  -88.0°  103.2°  110.6°  -82.0°   H11                                                                                 
E12    -116.4°   88.2°  -68.4°   85.2°   29.4°  -56.2°  147.2°  101.5°  -36.3° -143.0°  106.0°   E12                                                                          
E13     105.3°  -62.3° -143.2°  -46.9°  142.1° -148.4°   45.5°   53.3° -153.9°   90.4°  -51.5° -123.2°   E13                                                                   
E14     -47.7° -145.9°   14.1°  158.4°  -64.2°   20.6° -132.7° -152.6°  -37.3°   69.5°  104.0°  -73.5°  151.4°   E14                                                            
E15    -139.6°   45.1° -139.1°   19.1°  101.5° -131.1°   75.3°   47.2°  118.1° -131.9°  -67.4°   82.8°  -41.5°  151.6°   E15                                                     
E16      20.1° -141.0°   51.9° -156.2° -103.5°  -63.3°  -90.0° -131.5°  -82.1°   24.8°   91.9° -118.3°  114.1°  -44.8°  154.6°   E16                                              
H17    -150.0°   37.7° -139.6°   13.3°   92.6° -129.5°   77.6°   42.6°  113.0° -139.5°  -77.5°   76.8°  -49.7°  149.5°  -10.4° -163.8°   H17                                       
E18      27.7° -129.6°  -64.3° -144.0° -111.0°  -75.6°   77.6° -119.3°  -93.3°   15.1°   93.1° -129.5°  105.4°  -56.4°  146.9°  -12.5°  153.7°   E18                                
E19    -137.7°  -67.8°   94.3°  -57.7°   52.0°   82.7° -123.7°  -79.8°   64.9°  167.9°   92.6°   29.0°  -94.7°  101.7°  -53.8°  146.0°  -48.1°  158.1°   E19                         
H20      88.0°  -93.2°   66.3° -116.5°  -43.5°   63.4° -105.2°  -98.5°   54.8°   87.0°  158.1°  -72.4° -147.9°   54.2° -132.4°   71.0° -122.0°   73.3°  -94.4°   H20                  
H21      37.9° -157.3°   12.6°  164.3°  -74.6°  -24.3°  129.3° -161.9°  -45.2°   62.9°   93.4°  -80.3°  140.1°  -11.4°  149.7°   39.2° -151.8°  -51.7°  106.9°   64.7°   H21           
H22    -107.3°   64.8° -137.8°   45.2°  136.9°  140.4°  -55.8°   57.9°  143.6°  -97.0°  -45.3°  114.5°  -10.3° -149.0°   35.5° -119.2°   44.9° -112.0°   86.7° -155.8°  137.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3dh8a_ :    (ASP13)  (VAL274)   [view usage] : d.157.1.14 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |PqsE-like |automated matches |Pseudomonas aeruginosa [TaxId: 287]
 d2q0ia_ :    (ASP13)  (ARG267)   [view usage] : d.157.1.14 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |PqsE-like |Quinolone signal response protein PqsE |Pseudomonas aeruginosa [TaxId: 287]
 d2vw8a_ :    (ASP13)  (ARG267)   [view usage] : d.157.1.14 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |PqsE-like |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d2q0ja1 :    (ASP13)  (ALA268)   [view usage] : d.157.1.14 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |PqsE-like |Quinolone signal response protein PqsE |Pseudomonas aeruginosa [TaxId: 287]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.157