Protein Concepts Dictionary

Tableau information

Concept source:  d1muma_  amino acid (a.a.) range (PRO6)(ASN278)

nSSEs in this Concept: 21

String of secondary struct.elems. (SSEs) defining this concept: HEHEHHEHEHEHHEHEHEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (PRO6)   (GLU17) H1
	   (LEU20)   (ILE26) E2
	   (ASN27)   (GLY38) H3
	   (GLN40)   (SER45) E4
	   (SER45)   (GLY55) H5
	   (THR63)   (CYS78) H6
	   (PRO81)   (ASP87) E7
	   (ALA94)  (ALA107) H8
	  (ALA110)  (ASP116) E9
	  (SER133)  (LYS148) H10
	  (ILE155)  (ALA161) E11
	  (ALA161)  (GLY166) H12
	  (LEU167)  (GLY181) H13
	  (MET184)  (GLU188) E14
	  (GLU192)  (ALA202) H15
	  (PRO206)  (THR212) E16
	  (THR221)  (HIS229) H17
	  (ALA233)  (LEU237) E18
	  (LEU237)  (GLY258) H19
	  (GLN260)  (MET267) H20
	  (THR269)  (ASN278) H21

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                                                 
E2      131.4°   E2                                                                                                                                          
H3       37.0°  152.2°   H3                                                                                                                                   
E4     -116.1°  -45.8°  150.8°   E4                                                                                                                            
H5      121.0°  -18.7°  133.7°  -62.6°   H5                                                                                                                     
H6       68.9°  114.9°  -42.6°  159.5°   97.4°   H6                                                                                                              
E7     -104.3°  -64.8°  134.2°  -19.0°  -81.1°  171.2°   E7                                                                                                       
H8       78.5°   94.4°  -61.0°  138.5°   76.5°  -21.0°  155.0°   H8                                                                                                
E9      -84.6°  -84.3°  112.7°  -39.5°  -98.6°  153.4°  -21.5°  156.2°   E9                                                                                         
H10    -113.1°   87.9°  -81.4°  127.7°   77.9°  -44.3°  142.5°  -41.4°  161.3°   H10                                                                                 
E11      64.9°  -83.5°  100.5°  -51.3°  -90.2°  129.8°  -41.8°  126.7°  -29.4°  164.7°   E11                                                                          
H12     -60.9° -113.5°   83.3°  -69.4° -125.5° -125.5°   51.1° -139.3°   29.9° -156.3°   37.6°   H12                                                                   
H13    -129.0°   92.2°  -92.0°  113.5°   91.6°  -68.8°  119.8°  -72.2°  131.6°  -31.7°  160.8°  131.7°   H13                                                            
E14      76.0°  -61.0°  112.5°  -47.0°  -63.8°  122.1°  -49.5°  109.3°  -49.6°  138.0°  -27.6°  -65.1°  153.1°   E14                                                     
H15    -119.4°  109.3°  -88.4°  105.3° -116.7°  -87.2°  101.3°  -98.6°  104.4°  -62.4°  132.5°   99.2°  -32.6°  150.8°   H15                                              
E16      86.4°  -45.0°  115.1°  -59.3°   39.2°  102.8°  -70.5°   85.0°  -77.2°  108.6°  -56.7°  -94.2°  130.0°  -29.4°  154.2°   E16                                       
H17     -94.7°  126.2°  -80.9°   93.8° -142.8° -105.8°   79.9° -124.9°   72.7°  -98.8°   96.4°   60.8°  -71.0°  121.9°  -38.6°  149.7°   H17                                
E18     121.3°  -10.1°  144.9°  -46.8°   16.0°  112.8°  -65.2°   91.8°  -82.7°   92.4°  -77.3° -110.4°  100.7°  -52.8°  119.3°  -34.9°  134.2°   E18                         
H19      99.5°  -34.4°  119.5°  -66.0°   21.8°   93.8°  -81.6°   73.5°  -93.2°   89.9°  -76.0° -113.5°  110.5°  -48.4°  138.2°  -19.8°  159.0°   25.5°   H19                  
H20      76.6° -151.2°   46.3°  135.6° -149.7°  -64.3°  120.6°  -84.3°  108.1°  -72.2°  120.1°   84.1°  -60.0°  146.1°  -43.2°  161.5°  -41.8° -160.6° -157.8°   H20           
H21     109.1° -118.8°   83.1° -104.0° -129.1°  -92.1°  -95.6° -107.1°  -94.2°  -74.8°  120.4°   85.4°  -46.4° -143.5°  -14.2° -161.7°  -24.6° -128.8° -151.0°   36.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1pymb_ :     (LYS7)  (ARG280)   [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |Phosphoenolpyruvate mutase |Blue mussel (Mytilus edulis) [TaxId: 6550]
 d1xg3a_ :     (SER5)  (ILE277)   [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |2-methylisocitrate lyase |Escherichia coli [TaxId: 562]
 d1xg4a_ :     (PRO6)  (ILE277)   [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |2-methylisocitrate lyase |Escherichia coli [TaxId: 562]
 d1m1ba_ :     (LYS6)  (GLN279)   [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |Phosphoenolpyruvate mutase |Blue mussel (Mytilus edulis) [TaxId: 6550]
 d1pyma_ :     (LYS6)  (ARG280)   [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |Phosphoenolpyruvate mutase |Blue mussel (Mytilus edulis) [TaxId: 6550]
 d1zlpb_ :    (THR29)  (SER299)   [view usage] : c.1.12.0 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |automated matches |automated matches |Clove pink (Dianthus caryophyllus) [TaxId: 3570]
 d3fa3i_ :     (ALA6)  (GLY292)   [view usage] : c.1.12.0 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |automated matches |automated matches |Aspergillus niger [TaxId: 5061]
 d1xg3b_ :     (PRO6)  (ILE277)   [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |2-methylisocitrate lyase |Escherichia coli [TaxId: 562]
 d1s2tb_ :     (LYS6)  (ARG280)   [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |Phosphoenolpyruvate mutase |Blue mussel (Mytilus edulis) [TaxId: 6550]
 d3fa3l_ :     (ALA6)  (GLY292)   [view usage] : c.1.12.0 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |automated matches |automated matches |Aspergillus niger [TaxId: 5061]
 d3eoob_ :     (SER8)  (GLY280)   [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |automated matches |Burkholderia pseudomallei [TaxId: 331109]
 d3m0ja_ :    (SER72)  (GLY360)   [view usage] : c.1.12.0 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |automated matches |automated matches |Cryphonectria parasitica [TaxId: 5116]
 d3eooa_ :     (SER8)  (GLY280)   [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |automated matches |Burkholderia pseudomallei [TaxId: 331109]
 d1m1bb_ :     (LYS6)  (ARG280)   [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |Phosphoenolpyruvate mutase |Blue mussel (Mytilus edulis) [TaxId: 6550]
 d1zlpa_ :    (THR29)  (ILE298)   [view usage] : c.1.12.0 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |automated matches |automated matches |Clove pink (Dianthus caryophyllus) [TaxId: 3570]
 d1xg3d_ :     (PRO6)  (LYS285)   [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |2-methylisocitrate lyase |Escherichia coli [TaxId: 562]
 d1muma_ :     (PRO6)  (ASN278)   [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |2-methylisocitrate lyase |Escherichia coli [TaxId: 562]
 d3eooe_ :     (SER8)  (TYR278)   [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |automated matches |Burkholderia pseudomallei [TaxId: 331109]
 d3eood_ :     (SER8)  (GLY280)   [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |automated matches |Burkholderia pseudomallei [TaxId: 331109]
 d3eooc_ :     (SER8)  (GLY280)   [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |automated matches |Burkholderia pseudomallei [TaxId: 331109]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1