Protein Concepts Dictionary

Tableau information

Concept source:  d2a6na1  amino acid (a.a.) range (GLY4)(GLY290)

nSSEs in this Concept: 21

String of secondary struct.elems. (SSEs) defining this concept: EHEHHEHEHEHEHEHEHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLY4)   (ASP14) E1
	   (ARG21)   (ALA33) H2
	   (SER37)   (VAL42) E3
	   (GLU47)   (LEU51) H4
	   (HIS53)   (ASP68) H5
	   (ILE71)   (ASN80) E6
	   (ALA81)   (ASN93) H7
	   (VAL98)  (THR104) E8
	  (SER111)  (THR126) H9
	  (PRO129)  (VAL135) E10
	  (PRO145)  (LYS155) H11
	  (ILE158)  (THR164) E12
	  (ASN166)  (VAL177) H13
	  (PHE181)  (ASP187) E14
	  (ALA191)  (GLY198) H15
	  (HIS200)  (VAL205) E16
	  (ALA211)  (GLY224) H17
	  (PHE226)  (LEU236) H18
	  (LEU236)  (PRO247) H19
	  (PRO247)  (GLY260) H20
	  (THR275)  (GLY290) H21

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                                                 
H2      162.3°   H2                                                                                                                                          
E3      -41.6°  153.8°   E3                                                                                                                                   
H4       52.3° -139.2°  -48.5°   H4                                                                                                                            
H5      117.6°  -48.1°  158.0°  116.8°   H5                                                                                                                     
E6      -73.9°  120.2°  -33.6°  -71.0° -168.3°   E6                                                                                                              
H7       93.4°  -76.0°  128.8°   87.9°  -30.3°  158.9°   H7                                                                                                       
E8      -81.4°  106.4°  -51.2°  -96.6°  146.6°  -27.5°  168.7°   E8                                                                                                
H9       82.6°  -92.6°  108.4°   63.3°  -53.6°  133.9°  -25.3°  159.4°   H9                                                                                         
E10     -76.1°  102.4°  -65.9° -114.0°  122.9°  -55.8°  138.3°  -30.7°  152.3°   E10                                                                                 
H11      92.4°  -88.4°  105.9°   57.5°  -61.8°  122.1°  -40.1°  149.4°  -19.7°  168.4°   H11                                                                          
E12     -72.1°  102.5°  -71.2° -117.0°  113.5°  -67.0°  125.8°  -43.1°  140.8°  -12.7°  159.7°   E12                                                                   
H13     119.2°  -71.2°  106.1°   68.2°  -76.4°   99.9°  -71.3°  120.0°  -58.4°  148.7°  -39.3°  160.8°   H13                                                            
E14     -51.2°  118.1°  -66.9° -102.4°  107.5°  -77.9°  107.5°  -61.5°  116.4°  -35.9°  134.4°  -25.5°  170.4°   E14                                                     
H15     150.9°  -41.6°  126.3°  -99.0°  -66.9°  104.1°  -78.7°  110.6°  -78.5°  127.7°  -63.5°  134.9°  -31.7°  157.9°   H15                                              
E16     -16.0°  150.9°  -45.7°   67.7°  117.3°  -73.2°   99.1°  -73.3°   93.9°  -62.1°  106.4°  -56.7°  135.1°  -35.2°  166.7°   E16                                       
H17     163.8°  -33.9°  122.9° -115.9°  -76.8°   92.0°  -97.5°   89.8° -102.4°  103.0°  -88.3°  110.3°  -54.3°  134.8°  -24.8°  163.1°   H17                                
H18      20.5°  152.9°  -37.8°   67.8°  126.8°  -63.4°  109.0°  -63.7°  102.3°  -55.6°  112.9°  -52.3°  135.9°  -34.8°  163.8°   10.0° -153.4°   H18                         
H19      41.7° -155.2°   -6.5°   42.1°  154.6°  -36.5°  124.5°  -56.6°  102.9°  -72.3°   99.6°  -77.6°  100.4°  -72.2°  122.5°   48.2° -122.3°   41.3°   H19                  
H20     -80.8°   83.4° -122.3°  -99.6°   37.3° -153.5°   27.9°  140.8°  -47.5°  110.7°  -65.9°   98.0°  -99.1°   80.2° -101.8°  -80.3°  114.1°   90.1°  121.3°   H20           
H21    -140.3°   27.6° -170.6° -123.2°  -22.9°  145.8°  -48.4°  133.8°  -66.0°  122.7°  -66.1°  118.0°  -64.6°  122.1°  -46.5° -139.7°   53.9°  148.7° -164.4°  -60.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3dz1a_ :     (GLY9)  (LEU300)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 1076]
 d4ahqc_ :     (GLY7)  (TYR291)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Staphylococcus aureus [TaxId: 93061]
 d3g0sa_ :     (GLY4)  (GLY290)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Salmonella typhimurium [TaxId: 99287]
 d2a6la1 :     (GLY4)  (GLY290)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Dihydrodipicolinate synthase |Escherichia coli [TaxId: 562]
 d4icna_ :     (GLY4)  (ARG290)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Shewanella benthica [TaxId: 43661]
 d1dhpa_ :     (GLY4)  (THR281)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Dihydrodipicolinate synthase |Escherichia coli [TaxId: 562]
 d2a6na1 :     (GLY4)  (GLY290)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Dihydrodipicolinate synthase |Escherichia coli [TaxId: 562]
 d4bwla_ :     (GLY7)  (GLY297)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Escherichia coli [TaxId: 562]
 d3fkka_ :    (GLY22)  (LEU311)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Azospirillum brasilense [TaxId: 192]
 d4icnb_ :     (GLY4)  (ARG290)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Shewanella benthica [TaxId: 43661]
 d3s5na_ :    (GLY37)  (GLY325)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3pb2a_ :     (GLY4)  (GLY292)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Thermotoga maritima [TaxId: 2336]
 d3puda_ :     (GLY4)  (GLY289)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Acinetobacter baumannii [TaxId: 575584]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1