Protein Concepts Dictionary

Tableau information

Concept source:  d1epxa_  amino acid (a.a.) range (THR61)(GLY350)

nSSEs in this Concept: 20

String of secondary struct.elems. (SSEs) defining this concept: HHEHHEEEHEHEHEHEHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (THR61)   (ALA75) H1
	   (ALA75)   (TYR81) H2
	   (SER83)   (HIS88) E3
	   (HIS88)   (GLN94) H4
	  (THR101)  (GLY110) H5
	  (PRO113)  (ASP118) E6
	  (GLY120)  (GLU126) E7
	  (GLU131)  (GLY136) E8
	  (GLY139)  (GLY151) H9
	  (ARG153)  (GLN164) E10
	  (SER169)  (GLY191) H11
	  (VAL193)  (GLU199) E12
	  (ASP207)  (GLY230) H13
	  (CYS236)  (ASN241) E14
	  (PRO255)  (THR269) H15
	  (PRO275)  (SER281) E16
	  (SER285)  (SER299) H17
	  (PHE306)  (ALA312) E18
	  (ALA312)  (ALA322) H19
	  (LEU330)  (GLY350) H20

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                                          
H2       58.8°   H2                                                                                                                                   
E3      172.7°  114.1°   E3                                                                                                                            
H4      -76.8° -119.3° -109.8°   H4                                                                                                                     
H5       -2.6°  -60.6° -173.3°   76.8°   H5                                                                                                              
E6      130.8°   76.4°  -42.0° -149.3°  131.4°   E6                                                                                                       
E7       99.0°   43.8°   73.7°  155.4° -100.0°   32.9°   E7                                                                                                
E8      -88.3° -108.8°   96.5°  -26.0°  -89.4°  127.5°  131.4°   E8                                                                                         
H9      -56.4° -114.3°  130.9°   35.1°  -55.1°  165.3° -154.6°   60.5°   H9                                                                                  
E10     105.6°   74.8°  -69.2°  162.6°  104.7°  -38.2°  -42.0°  165.0°  132.2°   E10                                                                          
H11     -73.5° -105.7°  111.8°  -16.0°  -74.4°  143.5°  139.4°   16.4°  -46.1° -178.3°   H11                                                                   
E12     108.4°   86.1°  -67.6°  150.4°  107.0°  -44.9°  -54.1°  162.1°  123.2°  -12.3°  166.4°   E12                                                            
H13     -92.1°  -80.1°   88.4°  -61.2°  -94.4°   99.8°   95.1°  -36.4°  -92.3°  134.9°  -46.8°  144.5°   H13                                                     
E14     105.5°  105.1°  -73.5°  126.5°  103.3°  -65.4°  -78.1°  145.8°  101.1°  -36.1°  142.5°  -24.1°  161.8°   E14                                              
H15     -95.7°  -59.3°   81.4°  -89.5°  -98.3°   76.1°   66.6°  -64.9° -117.7°  107.2°  -74.4°  118.1°  -28.5°  141.2°   H15                                       
E16     124.8°  131.1°  -57.3°  107.3°  122.2°  -70.3°  -95.1°  119.7°   95.0°  -56.8°  122.4°  -45.1°  139.3°  -28.0°  138.4°   E16                                
H17     -40.9°   26.7°  133.6°  -92.9°  -43.4°  101.7°   70.0°  -86.7°  -90.7°   99.9°  -80.3°  110.1°  -67.3°  124.2°  -58.1°  152.2°   H17                         
E18     149.9° -148.3°  -36.2°   88.7°  147.5°  -71.9° -104.7°   89.9°   97.0°  -81.0°   99.0°  -72.4°  103.9°  -62.5°  110.6°  -35.5°  168.6°   E18                  
H19     105.9°  161.3°  -80.5°   61.6°  103.8° -112.5° -141.1°   79.4°   54.3° -101.6°   77.3°  -89.4°  113.0°  -66.8° -137.6°   46.1° -144.8°  -44.4°   H19           
H20     -52.0°    7.0°  120.9° -115.9°  -53.7°   82.2°   49.4° -108.5° -107.9°   76.9° -103.4°   87.6°  -82.7°  104.6°  -64.1°  131.8°  -23.1°  154.0°  154.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1f2ja_ :    (THR61)  (VAL330)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Fructose-1,6-bisphosphate aldolase |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
 d1a5ca_ :    (SER41)  (GLY346)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Fructose-1,6-bisphosphate aldolase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
 d3b8da_ :    (THR51)  (ALA337)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Fructose-1,6-bisphosphate aldolase |Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId: 9986]
 d1qo5d_ :    (THR51)  (GLY340)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Fructose-1,6-bisphosphate aldolase |Human (Homo sapiens), liver isozyme [TaxId: 9606]
 d1xfba1 :    (THR52)  (ALA339)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Fructose-1,6-bisphosphate aldolase |Human (Homo sapiens), brain isozyme [TaxId: 9606]
 d1qo5g_ :    (THR51)  (GLY340)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Fructose-1,6-bisphosphate aldolase |Human (Homo sapiens), liver isozyme [TaxId: 9606]
 d2qdga_ :    (SER45)  (GLY350)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Trypanosome (Leishmania mexicana) [TaxId: 5665]
 d1epxa_ :    (THR61)  (GLY350)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Fructose-1,6-bisphosphate aldolase |Trypanosome (Leishmania mexicana) [TaxId: 5665]
 d4d2ja_ :   (SER106)  (GLN409)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Toxoplasma gondii [TaxId: 5811]
 d1qo5f_ :    (THR51)  (GLY340)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Fructose-1,6-bisphosphate aldolase |Human (Homo sapiens), liver isozyme [TaxId: 9606]
 d4tu1a_ :    (SER51)  (LEU355)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Toxoplasma gondii [TaxId: 5811]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1