Protein Concepts Dictionary

Tableau information

Concept source:  d4mkva2  amino acid (a.a.) range (ILE155)(GLY403)

nSSEs in this Concept: 20

String of secondary struct.elems. (SSEs) defining this concept: HEHEHEHEHHEHHEHEEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ILE155)  (LEU162) H1
	  (LEU169)  (LYS175) E2
	  (SER181)  (GLY196) H3
	  (ASP198)  (ASP203) E4
	  (TRP214)  (THR232) H5
	  (ILE235)  (ASN241) E6
	  (THR246)  (GLY261) H7
	  (PRO263)  (ASP268) E8
	  (ASP268)  (GLY273) H9
	  (ASN277)  (ASN287) H10
	  (LEU290)  (ARG295) E11
	  (MET297)  (ASP302) H12
	  (PHE311)  (LEU320) H13
	  (ASP324)  (HIS327) E14
	  (ARG339)  (ARG350) H15
	  (ASP352)  (LYS356) E16
	  (PHE364)  (SER370) E17
	  (ILE375)  (GLY381) E18
	  (MET387)  (ILE393) H19
	  (ASP397)  (GLY403) E20

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                                          
E2       83.6°   E2                                                                                                                                   
H3      -87.8°  152.1°   H3                                                                                                                            
E4      117.1°  -35.1°  150.8°   E4                                                                                                                     
H5      -64.6°  138.2°  -23.3°  164.6°   H5                                                                                                              
E6      126.4°  -45.4°  144.5°  -10.4°  165.3°   E6                                                                                                       
H7       39.7°  122.6°  -50.0°  156.8°  -28.2°  165.5°   H7                                                                                                
E8     -139.2°  -58.6°  117.8°  -33.0°  135.3°  -30.0°  159.6°   E8                                                                                         
H9      120.5°   62.0° -142.8°   36.1° -158.1°   30.2° -143.4°   56.8°   H9                                                                                  
H10      45.4°  126.3°  -58.1°  150.7°  -41.9°  152.5°  -20.3° -175.0°  124.1°   H10                                                                          
E11    -129.1°  -58.9°  109.0°  -44.0°  121.9°  -44.3°  142.9°  -17.1°  -73.1° -162.8°   E11                                                                   
H12    -160.0° -106.2°   75.4°  -76.9°  -98.0°   69.2° -125.3°   47.6°   79.4° -127.5°  -50.4°   H12                                                            
H13      62.9°  106.2°  -93.2°  111.1°  -83.6°  109.9°  -62.4°  137.9°   81.2°  -43.0°  154.1°  127.8°   H13                                                     
E14     -89.3°  -60.8°   92.6°  -73.9°   91.0°  -80.0°  101.3°  -60.4° -109.8°  121.3°  -43.9°  -80.8°  151.3°   E14                                              
H15      78.3°  112.1°  -92.0°  107.1°  -88.3°  103.2°  -72.3°  127.5°   73.1°  -52.0°  144.6°  112.6°  -15.5° -166.6°   H15                                       
E16     141.2°  -82.6°   87.7°  -63.4°  105.1°  -60.2°  131.9°  -30.5°  -83.5°  145.8°  -23.7°  -29.8° -155.8°   52.5° -140.4°   E16                                
E17     -45.0°  102.7°  -89.5°  118.6°  -74.1°  120.5°  -48.8°  150.5°   94.9°  -32.3°  161.1°  143.2°   18.2° -134.1°   33.3° -173.0°   E17                         
E18      78.0°  -41.7°  110.5°  -64.4°  102.4°  -73.1°  102.8°  -63.9°  -99.4°  119.5°  -51.1°  -97.5°  133.4°  -21.8°  146.4°   67.7°  119.3°   E18                  
H19    -128.2°  126.4°  -79.2°   94.8°  -95.1°   84.8° -102.2°   89.5°   64.6°  -86.9°  102.5°   59.9°  -68.0°  140.7°  -52.7°   88.6°  -84.6°  153.4°   H19           
E20      66.9°  -24.1°  129.7°  -57.4°  114.1°  -67.8°  102.4°  -72.4°   86.0°  112.3°  -65.6° -115.9°  110.3°  -47.0°  121.7°  -87.0°   99.6°  -25.2°  150.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1rbla1 :   (ILE155)  (GLY403)   [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Synechococcus sp., strain pcc 6301 [TaxId: 1131]
 d1rbob1 :   (ILE155)  (GLY403)   [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Spinach (Spinacia oleracea) [TaxId: 3562]
 d1rlcl1 :   (ILE155)  (GLY404)   [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Tobacco (Nicotiana tabacum), variant turkish samsun [TaxId: 4097]
 d4mkva2 :   (ILE155)  (GLY403)   [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |automated matches |Pea (Pisum sativum) [TaxId: 3888]
 d3rubl1 :   (ILE155)  (GLY404)   [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Tobacco (Nicotiana tabacum), variant turkish samsun [TaxId: 4097]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1