Protein Concepts Dictionary

Tableau information

Concept source:  d1mk8a_  amino acid (a.a.) range (LEU4)(GLY293)

nSSEs in this Concept: 20

String of secondary struct.elems. (SSEs) defining this concept: EHHHHHEHHHHEEEHHHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LEU4)   (VAL10) E1
	   (SER15)   (GLU32) H2
	   (TYR42)   (THR56) H3
	   (PHE73)   (ASP79) H4
	   (ALA83)   (PHE99) H5
	  (SER103)  (GLN120) H6
	  (PRO122)  (PRO134) E7
	  (ASP150)  (ASN162) H8
	  (ASP165)  (LEU177) H9
	  (HIS181)  (GLY186) H10
	  (GLU201)  (LEU207) H11
	  (ASP210)  (GLU214) E12
	  (GLN222)  (LYS226) E13
	  (GLY228)  (LEU232) E14
	  (LEU232)  (ASP241) H15
	  (PRO242)  (ASP254) H16
	  (ASP254)  (GLU271) H17
	  (GLY273)  (PRO277) E18
	  (PRO283)  (THR288) E19
	  (THR288)  (GLY293) H20

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                                          
H2       91.9°   H2                                                                                                                                   
H3     -137.0°  130.2°   H3                                                                                                                            
H4      -94.3°  -44.9°  120.4°   H4                                                                                                                     
H5       42.8°  128.4°  -95.5°  134.8°   H5                                                                                                              
H6      -64.7°  -60.2° -138.3°  -31.3°  103.5°   H6                                                                                                       
E7      115.4°  102.9°   54.6°  138.5°  -83.7°  162.6°   E7                                                                                                
H8      -69.2°  148.3°   69.3° -155.4°  -26.5° -125.8°   66.1°   H8                                                                                         
H9       56.2°  -44.9° -147.7°  -79.1°   84.0°   71.9°  -93.4°  104.4°   H9                                                                                  
H10    -151.7°  116.4°   15.6° -106.0° -111.1° -128.7°   60.2°   84.9°  146.2°   H10                                                                          
H11     128.3°   50.3°  -91.2°   34.6°  168.7°   65.7°  107.6° -159.7°   95.1°  -75.6°   H11                                                                   
E12     124.8°   78.5°  -66.8°  113.2° -105.5°  138.5°  -25.8°   91.4°   82.2°  -64.9°  -85.5°   E12                                                            
E13     -48.3°  -59.2°  155.3°  -46.0°   90.0°   18.8° -150.1° -115.3°  -56.8° -147.4°   80.2°  134.6°   E13                                                     
E14    -132.3°  133.8°   -5.9°  126.2°  -90.2° -142.9°   51.2°   63.8°  144.7°   21.2°  -96.8°  -65.8°  158.4°   E14                                              
H15    -100.2° -108.5°   76.6°   63.9° -103.8°  -63.1°  131.2° -100.0° -135.0°  -72.5°  -69.0° -134.6°   78.7°  -80.2°   H15                                       
H16       6.9°  -87.4°  142.2°  -87.4°   49.3°  -57.9° -121.5°   75.6°  -55.0°  155.8° -121.5°  128.7°  -41.5°  137.8°  -96.7°   H16                                
H17     110.8°  114.2°   49.9°  149.2°  -74.8°  171.6°   11.6°   55.2°  -99.7°   58.7°  116.4°  -37.4° -153.8°   45.5°  125.2° -117.4°   H17                         
E18     -51.1° -143.0°   86.5° -126.2°   22.6°  -97.1°   95.3°  -29.2°  102.7°  100.7° -150.1°  120.4°   89.6°  -82.4°  -81.5°   55.7°   84.4°   E18                  
E19      53.3°  -38.7°  166.4°  -59.7°   91.8°  -49.6°  115.2°  116.8°   22.4° -155.0°  -83.4°  100.3°  -35.6°  165.9° -112.7°  -49.1°  122.0°  104.3°   E19           
H20     -12.0° -102.4°  127.3°  -97.4°   37.5°  -66.4° -117.7°  -62.8°   68.2°  140.9°  132.0°  132.3°  -52.7° -123.2°  -91.1°   15.0° -110.8°   40.8°  -64.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2xj5a_ :     (LEU4)  (GLY293)   [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1s6va_ :     (PRO3)  (GLY293)   [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Cytochrome c peroxidase, CCP |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d2euna_ :     (THR3)  (GLY293)   [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Cytochrome c peroxidase, CCP |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d3e2oa_ :     (LEU4)  (GLY293)   [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Cytochrome c peroxidase, CCP |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d4a71a_ :     (LEU4)  (GLY293)   [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1krja_ :     (PRO3)  (GLY293)   [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Cytochrome c peroxidase, CCP |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d2v2ea_ :     (LEU4)  (GLY293)   [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1mk8a_ :     (LEU4)  (GLY293)   [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Cytochrome c peroxidase, CCP |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d4nfga_ :     (LEU4)  (GLY293)   [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Cytochrome c peroxidase, CCP |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  a.93