Protein Concepts Dictionary

Tableau information

Concept source:  d5xina_  amino acid (a.a.) range (ASP9)(VAL259)

nSSEs in this Concept: 20

String of secondary struct.elems. (SSEs) defining this concept: EHHEHHEHHHEHEHEHHEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ASP9)   (GLY14) E1
	   (GLY14)   (TRP20) H2
	   (ASP35)   (GLY47) H3
	   (TYR49)   (HIS54) E4
	   (HIS54)   (VAL59) H5
	   (ASP64)   (GLY83) H6
	   (GLY83)   (ASN92) E7
	   (ASN92)   (PRO97) H8
	   (PRO97)  (GLY102) H9
	  (ARG109)  (GLY130) H10
	  (LYS132)  (GLY138) E11
	  (VAL151)  (GLY173) H12
	  (ARG177)  (LYS183) E13
	  (THR195)  (LEU206) H14
	  (LEU211)  (GLU217) E15
	  (GLU217)  (MET223) H16
	  (PHE228)  (LYS239) H17
	  (PHE242)  (ASN247) E18
	  (ASN247)  (GLY251) E19
	  (PHE254)  (VAL259) E20

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                                          
H2      -70.8°   H2                                                                                                                                   
H3      161.1°   96.2°   H3                                                                                                                            
E4      -25.2°  -88.2°  147.2°   E4                                                                                                                     
H5       71.4°   61.4° -115.1°   95.5°   H5                                                                                                              
H6      160.9°   90.2°  -17.4°  163.7°   98.0°   H6                                                                                                       
E7      -42.0°  -88.6°  127.0°  -20.3° -113.2°  143.4°   E7                                                                                                
H8      -19.0°   53.2°  143.1°  -36.2°  -71.3°  143.0°  -45.1°   H8                                                                                         
H9     -121.0° -120.5°  -53.3°   96.7° -167.7°  -70.2°   79.1° -120.3°   H9                                                                                  
H10     139.3°   95.5°  -53.2°  158.8°   68.5°  -37.4° -175.9°  137.8°  -99.2°   H10                                                                          
E11     -47.6°   62.2°  114.5°  -40.9°  106.1°  125.5°  -29.0°  -37.1°  -84.3°  154.9°   E11                                                                   
H12     117.1°  112.1°  -80.2°  128.0°   60.1°  -67.3°  145.1°  127.1° -110.4°  -32.1°  164.1°   H12                                                            
E13     -66.6°   42.3°   94.5°  -67.4°  100.4°  101.0°  -56.3°  -49.6°  -85.7°  127.5°  -27.6°  153.6°   E13                                                     
H14      87.5°  151.4° -108.9°   78.2°  -94.6° -109.7°   87.1°  106.5°   86.4°  -89.0°  116.0°  -61.0°  143.4°   H14                                              
E15     -82.9°  -16.2°   82.0°  -95.9°   74.9°   78.9°  -90.9°  -64.2° -105.3°   93.2°  -62.1°  117.0°  -36.7°  167.6°   E15                                       
H16     -72.9°   80.5°   91.9°  -56.8°  134.3°  107.0°   37.0°   65.6°  -55.6° -144.4°   28.8° -165.6°   38.1°  111.3°  -73.2°   H16                                
H17     105.2° -161.4°  -91.4°   94.5° -100.0°  -92.1°  100.3°  124.2°   77.5°  -75.6°  129.1°  -52.6°  153.8°  -17.7° -168.8°  116.3°   H17                         
E18     -74.0°    7.5°   91.4°  -89.1°   68.7°   87.4°  -86.8°  -55.7° -113.0°   97.3°  -59.0°  117.1°  -36.7°  158.1°   -9.7°  -74.8° -168.5°   E18                  
E19      74.1°   73.6°   89.3°   60.7°  129.9° -103.3°   41.8°   64.4°  -58.8° -140.2°   27.4° -168.4°   31.3°  119.0°   65.7°    7.6°  123.6°   67.6°   E19           
E20    -137.4°  -94.9°   55.0° -157.2°  -66.7°   39.1°  175.8° -136.3°  101.0°    1.8° -155.1°  -31.0°  127.8°  -88.7°   93.1°  146.0°  -75.7°   97.0°  141.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d8xima_ :     (ASP9)  (VAL259)   [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Actinoplanes missouriensis [TaxId: 1866]
 d4xima_ :     (ASP9)  (VAL259)   [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Actinoplanes missouriensis [TaxId: 1866]
 d1xima_ :     (ASP9)  (VAL259)   [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Actinoplanes missouriensis [TaxId: 1866]
 d5xina_ :     (ASP9)  (VAL259)   [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Actinoplanes missouriensis [TaxId: 1866]
 d3xina_ :     (ASP9)  (VAL259)   [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Actinoplanes missouriensis [TaxId: 1866]
 d1bhwa_ :     (ASP9)  (VAL259)   [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Actinoplanes missouriensis [TaxId: 1866]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1