Protein Concepts Dictionary

Tableau information

Concept source:  d1a40a_  amino acid (a.a.) range (ASP51)(ASP292)

nSSEs in this Concept: 20

String of secondary struct.elems. (SSEs) defining this concept: EHEEEHHEHHEHEHEHEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ASP51)   (ASP56) E1
	   (SER60)   (GLU67) H2
	   (GLY68)   (PRO73) E3
	   (VAL75)   (LEU81) E4
	   (GLU92)   (ASP96) E5
	   (LYS98)  (GLY106) H6
	  (GLU114)  (ASN120) H7
	  (ASN129)  (ARG135) E8
	  (SER139)  (VAL152) H9
	  (ASN153)  (ASN159) H10
	  (LEU172)  (GLY176) E11
	  (GLY176)  (ARG186) H12
	  (GLY189)  (TYR193) E13
	  (TRP197)  (ASN203) H14
	  (LEU204)  (ILE210) E15
	  (THR220)  (ASP232) H16
	  (ALA238)  (ASN243) E17
	  (ILE252)  (ASP263) E18
	  (PRO267)  (LYS282) H19
	  (GLY284)  (ASP292) H20

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                                          
H2      166.8°   H2                                                                                                                                   
E3      -51.8°  132.7°   E3                                                                                                                            
E4      -46.9°  120.2°  -71.6°   E4                                                                                                                     
E5      -86.6°   92.9° -133.1°   96.8°   E5                                                                                                              
H6     -109.4°   57.5°  121.1°   63.7°  -89.6°   H6                                                                                                       
H7       86.2° -105.9°  -51.3° -122.3°  114.5° -152.5°   H7                                                                                                
E8     -146.9°  -41.9°  137.2° -150.9°  -67.1°  -91.0°   86.8°   E8                                                                                         
H9      -24.1°  158.4°  -68.7°  -64.5°  -65.5° -118.1°   85.4° -123.0°   H9                                                                                  
H10    -136.9°   36.0°  166.4°  106.6°  -60.2°   49.4° -130.8°  -44.6° -123.4°   H10                                                                          
E11     138.1°  -55.0°  101.3°  165.4°  -97.3° -112.4°   54.2°  -36.6°  125.7°  -77.2°   E11                                                                   
H12      45.8°  126.0°  -43.8°   29.9°  122.6°   81.5°  -95.1°  167.4°  -69.7°  130.5°  138.5°   H12                                                            
E13     124.4°  -65.5° -123.9° -155.6°  -58.9° -112.1°   73.3°  -23.8°  101.6°  -63.0°  -38.6° -166.4°   E13                                                     
H14     -86.3°   89.9°   51.2°   65.3°  160.4°   75.6°  -83.2°  124.9° -110.0°  115.4°  100.2°  -43.4°  138.7°   H14                                              
E15      56.2° -131.1°  -87.5°   95.5°  -47.5° -131.5°   76.0°  -90.7°   32.8° -106.1°  -96.9°  101.9°  -68.7° -137.6°   E15                                       
H16      93.6°  -91.0° -126.3°  117.0°  -22.8° -107.7°   93.3°  -54.6°   69.6°  -66.9°  -77.6°  137.5°  -39.3° -176.5°   40.8°   H16                                
E17     -29.5°  144.1°   35.6°  -37.3° -113.9°   97.6°   85.0°  171.3°  -53.4°  143.9°  136.8°  -18.4°  148.7°   56.9°   84.5°  123.0°   E17                         
E18     157.0°  -26.0°  148.3°  133.7°   70.4°  -71.7° -102.9°   19.5°  134.4°  -28.0°  -49.2° -150.4°   42.6° -115.5°  105.1°  -65.2° -168.7°   E18                  
H19     -42.4°  145.1°   15.1°   73.7° -118.4°  131.5°  -49.1° -135.0°  -55.4° -178.6°  102.9°   50.3° -116.2°   66.0°  -72.5° -111.7°   36.4° -152.0°   H19           
H20     -38.5°  128.7°  -65.7°    8.5°   96.4°   72.3° -115.3° -157.0°  -57.1°  113.9°  165.6°   27.2° -154.0°   67.1°  -89.0°  114.7°  -30.5°  141.5°  -66.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1ixia_ :    (ASP51)  (ASP292)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Escherichia coli [TaxId: 562]
 d1quka_ :    (ASP56)  (ASP292)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Escherichia coli [TaxId: 562]
 d1ixha_ :    (ASP51)  (ASP292)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Escherichia coli [TaxId: 562]
 d1qula_ :    (ASP56)  (ASP292)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Escherichia coli [TaxId: 562]
 d1quia_ :    (ASP51)  (ASP292)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Escherichia coli [TaxId: 562]
 d1a40a_ :    (ASP51)  (ASP292)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Escherichia coli [TaxId: 562]
 d1ixga_ :    (ASP56)  (LYS282)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Escherichia coli [TaxId: 562]
 d1a54a_ :    (ASP56)  (LYS282)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.94