Protein Concepts Dictionary

Tableau information

Concept source:  d3rtja_  amino acid (a.a.) range (PRO7)(TYR257)

nSSEs in this Concept: 20

String of secondary struct.elems. (SSEs) defining this concept: EHEEEEEEHEHHHHHHEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (PRO7)   (THR13) E1
	   (THR17)   (LEU32) H2
	   (ALA36)   (HIS40) E3
	   (PRO43)   (VAL49) E4
	   (ILE58)   (ASN64) E5
	   (LEU68)   (ALA73) E6
	   (VAL82)   (GLY87) E7
	   (ASN88)   (PHE93) E8
	   (GLN98)  (LEU107) H9
	  (GLN112)  (THR116) E10
	  (ASP124)  (GLY131) H11
	  (ASN141)  (GLY157) H12
	  (LEU161)  (PHE181) H13
	  (PHE181)  (ASN195) H14
	  (ASP201)  (TRP211) H15
	  (TRP211)  (SER221) H16
	  (SER228)  (GLN233) E17
	  (SER238)  (TYR243) E18
	  (ILE249)  (ALA253) H19
	  (ALA253)  (TYR257) E20

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                                          
H2     -159.9°   H2                                                                                                                                   
E3      -58.7°  109.8°   E3                                                                                                                            
E4     -130.1°   39.1°  123.2°   E4                                                                                                                     
E5      -20.7° -161.0°  -79.4° -122.0°   E5                                                                                                              
E6      142.8°  -29.1°   84.4°  -65.5°  163.5°   E6                                                                                                       
E7      -70.1°  120.3° -128.6°   92.4°  -49.4°  147.0°   E7                                                                                                
E8       94.5°  -71.3°   38.8°  -89.5°  114.6°  -49.0°  161.1°   E8                                                                                         
H9      -76.2°  120.9° -126.5°  107.1°  -58.0°  136.8°  -24.9°  163.3°   H9                                                                                  
E10      82.9°  -81.7°   30.2°  -94.2°  102.8°  -60.9°  149.4°  -12.1°  156.7°   E10                                                                          
H11     -34.6°  137.1°  -86.1°   98.6°  -24.4°  151.9°  -49.9°  111.3°  -68.6°   99.6°   H11                                                                   
H12    -114.2°   60.5°  135.3°   23.6° -101.0°   88.5°  -69.4°  109.6°  -87.0°  111.4°   79.9°   H12                                                            
H13     113.1°  -78.3°  -80.6°  116.2°  120.2°  -59.0°  118.3°  -77.2°   93.6°  -85.0° -144.6° -131.3°   H13                                                     
H14      34.8°  155.7°  -92.5°  120.0°   15.1° -174.5°  -36.2°  129.2°  -43.0°  117.6°   31.7°  -96.9° -116.0°   H14                                              
H15    -166.0°   13.2°  122.9°  -36.0° -153.7°   40.3°  107.8°  -84.4°  108.0°  -94.8°  133.5°  -53.8°   80.3° -143.8°   H15                                       
H16     132.9°  -55.6°   86.1°  -94.3°  143.2°  -36.7°  130.8°  -67.7°  108.5°  -78.4°  167.1° -112.8°   23.2°  138.7°  -59.3°   H16                                
E17     -26.0°  159.0°  -84.5°  120.2°    5.4°  168.8°  -44.2°  120.0°  -52.9°  108.1°   25.0°   98.4° -120.3°  -10.0°  149.7° -143.5°   E17                         
E18     159.9°  -34.3°  109.6°  -69.6°  159.4°  -33.3°  117.7°  -80.5°  103.5°  -92.5°  163.8°  -85.7°   46.8°  145.7°  -33.6°   27.6°  155.4°   E18                  
H19     -93.7°   89.1°  145.0°   56.6°  -75.1° -118.3°   35.9° -140.5°  -55.2°  137.8°   61.2°  -33.5°  133.3°   66.7°  -78.7° -128.3°   71.0° -102.6°   H19           
E20    -143.0°   19.6°  109.9°  -22.6° -142.2°   43.1°  113.5°  -72.0°  123.5°  -79.7°  117.8°   46.0°   97.6°  142.4°  -24.1°  -74.6°  141.5°  -53.7°   78.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2vc3a_ :     (PRO7)  (TYR257)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Ricin A-chain |Castor bean (Ricinus communis) [TaxId: 3988]
 d4huox_ :     (PRO7)  (TYR257)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Ricin A-chain |Castor bean (Ricinus communis) [TaxId: 3988]
 d3srpa_ :     (PRO7)  (TYR257)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Ricin A-chain |Castor bean (Ricinus communis) [TaxId: 3988]
 d3bjga_ :     (PRO7)  (TYR257)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Ricin A-chain |Castor bean (Ricinus communis) [TaxId: 3988]
 d1ifsa_ :     (PRO7)  (TYR257)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Ricin A-chain |Castor bean (Ricinus communis) [TaxId: 3988]
 d1obsa_ :     (PRO7)  (TYR257)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Ricin A-chain |Castor bean (Ricinus communis) [TaxId: 3988]
 d3rtja_ :     (PRO7)  (TYR257)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Ricin A-chain |Castor bean (Ricinus communis) [TaxId: 3988]
 d4esia_ :     (PRO7)  (TYR257)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Ricin A-chain |Castor bean (Ricinus communis) [TaxId: 3988]
 d3rtia_ :     (ILE9)  (TYR257)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Ricin A-chain |Castor bean (Ricinus communis) [TaxId: 3988]
 d1uq5a_ :     (PRO7)  (TYR257)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Ricin A-chain |Castor bean (Ricinus communis) [TaxId: 3988]
 d1uq4a_ :     (PRO7)  (TYR257)   [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Ricin A-chain |Castor bean (Ricinus communis) [TaxId: 3988]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.165