Protein Concepts Dictionary

Tableau information

Concept source:  d3r6qf_  amino acid (a.a.) range (ASP4)(LEU430)

nSSEs in this Concept: 20

String of secondary struct.elems. (SSEs) defining this concept: EEHHHHHHHHHHHEHHEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ASP4)    (LYS9) E1
	   (GLY13)   (PRO18) E2
	   (VAL25)   (PRO35) H3
	   (PRO43)   (GLY64) H4
	   (ASP67)   (GLY84) H5
	   (GLY84)   (GLN89) H6
	  (GLY100)  (GLY120) H7
	  (SER130)  (ASN136) H8
	  (SER140)  (PHE178) H9
	  (LEU196)  (TYR223) H10
	  (ASP239)  (GLY255) H11
	  (HIS263)  (GLN269) H12
	  (ASP272)  (SER300) H13
	  (GLU308)  (PRO312) E14
	  (VAL328)  (GLY354) H15
	  (PRO363)  (ILE391) H16
	  (ILE391)  (GLU396) E17
	  (GLU396)  (SER405) H18
	  (SER405)  (ALA411) H19
	  (TYR418)  (LEU430) H20

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                                          
E2      152.7°   E2                                                                                                                                   
H3      -86.8°  100.6°   H3                                                                                                                            
H4       59.0° -110.5°  145.7°   H4                                                                                                                     
H5     -120.3°   60.8°  -39.9° -161.4°   H5                                                                                                              
H6      -76.7°  129.6°  -58.6°  107.8°  -89.2°   H6                                                                                                       
H7      122.6°  -57.8° -149.5°  -64.0°  115.8°  116.1°   H7                                                                                                
H8      -79.1°   73.8°  -98.9°   77.0°  -84.6° -147.5°   95.1°   H8                                                                                         
H9     -121.8°   44.6°  -63.3°  133.8°  -28.2° -117.3°  101.9°   60.0°   H9                                                                                  
H10      56.4° -128.1°  129.9°  -29.7°  168.1°   78.9°  -71.0° -105.0° -163.5°   H10                                                                          
H11    -148.3°   30.5°  -70.4°  140.6°  -31.3° -107.3°   84.7°   82.9°  -27.8°  154.9°   H11                                                                   
H12    -126.7°   74.4°  -47.8° -155.2°   42.4°  -57.5°  102.6°  126.7°   67.3° -128.3°   50.0°   H12                                                            
H13    -134.9°   47.9°  -52.9°  156.9°  -14.6°  -94.6°  101.3°   87.4°   27.4° -165.7°   17.5°  -40.2°   H13                                                     
E14     114.5°   77.4° -137.6°   66.0° -123.2°  -89.6°   26.9°  120.3°  121.3°  -58.1°   97.1°  -92.5° -109.6°   E14                                              
H15     -28.8° -153.7°  105.3°  -43.4°  144.5°   69.9°  -99.4°  -97.7° -150.3°   28.9° -175.7°  127.4° -158.2°   86.2°   H15                                       
H16     137.2°   26.8°  -77.4°  127.6°  -38.2° -123.9°   84.4°   64.8°   17.9° -152.7°  -18.3°   67.5°   29.5°  103.6° -162.5°   H16                                
E17    -102.8°   70.4°   38.2° -143.8°   20.9°  -96.1°  128.2°  -68.5°  -26.9°  159.2°  -45.9°   61.0°   33.2°  142.6° -130.5°   43.9°   E17                         
H18     -55.4°  116.0°   40.2° -109.9°   65.1°   78.9° -164.7°  -69.6°  -71.6°  111.3°  -93.9°   88.0°   79.5°  166.1°  -82.5°  -89.5°  -48.0°   H18                  
H19      64.2°  -88.4°  102.6°   65.2°  -97.2°  138.0°  -98.2°  -15.9°  -74.8°   91.2°  -98.7°  139.6° -101.9°  119.6°   81.9°  -80.6°  -78.9°  -66.9°   H19           
H20    -127.2°   80.1°  -79.7° -118.9°   77.3°  -52.7°   75.7°  153.2°   96.7°  -95.8°   71.3°  -36.5°   70.3°   58.0° -108.5°   89.0°   97.1°  118.3°  168.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4admc_ :    (ARG11)  (LYS430)   [view usage] : a.127.1.0 |L-aspartase-like |L-aspartase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d3rrpb_ :     (ARG8)  (ARG431)   [view usage] : a.127.1.0 |L-aspartase-like |L-aspartase-like |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
 d3r6qf_ :     (ASP4)  (LEU430)   [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |L-aspartate ammonia lyase |Bacillus sp., ym55-1 [TaxId: 1409]
 d4apbd_ :    (ARG11)  (ARG432)   [view usage] : a.127.1.0 |L-aspartase-like |L-aspartase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d1jswa_ :     (ARG6)  (THR434)   [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |L-aspartate ammonia lyase |Escherichia coli [TaxId: 562]
 d3r6vd_ :     (ARG6)  (LEU430)   [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |L-aspartate ammonia lyase |Bacillus sp., ym55-1 [TaxId: 1409]
 d3r6va_ :     (ARG6)  (GLY417)   [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |L-aspartate ammonia lyase |Bacillus sp., ym55-1 [TaxId: 1409]
 d3tv2a_ :   (ARG145)  (GLY557)   [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |automated matches |Burkholderia pseudomallei [TaxId: 320372]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 a.127