Protein Concepts Dictionary

Tableau information

Concept source:  d1pjmb_  amino acid (a.a.) range (ALA222)(PHE496)

nSSEs in this Concept: 19

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHHHHHHHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ALA222)  (ARG238) H1
	  (LEU246)  (ILE252) H2
	  (LEU253)  (LEU260) H3
	  (PRO265)  (THR279) H4
	  (ASN283)  (GLY293) H5
	  (VAL295)  (LEU302) H6
	  (GLU306)  (THR322) H7
	  (THR324)  (GLY335) H8
	  (GLY335)  (ASN346) H9
	  (LYS348)  (ALA364) H10
	  (ARG366)  (GLY377) H11
	  (LEU378)  (SER387) H12
	  (ASP390)  (GLY407) H13
	  (THR409)  (CYS419) H14
	  (GLU423)  (LEU429) H15
	  (THR434)  (GLY455) H16
	  (GLU456)  (GLY468) H17
	  (GLY468)  (GLN477) H18
	  (ASN481)  (PHE496) H19

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                                   
H2     -154.8°   H2                                                                                                                            
H3     -132.6°   37.7°   H3                                                                                                                     
H4        9.2° -151.4° -138.3°   H4                                                                                                              
H5      145.7°  -18.0°  -54.5° -138.7°   H5                                                                                                       
H6     -115.8°   68.5°   35.8° -124.9°   86.5°   H6                                                                                                
H7       27.0° -132.9° -133.5°   19.3° -119.4° -135.8°   H7                                                                                         
H8     -153.4°   16.0°  -23.3° -155.8°   34.0°  -52.5° -141.7°   H8                                                                                  
H9      -95.6°   97.2°   67.9° -104.4°  114.5°   32.1° -122.1°   81.9°   H9                                                                           
H10      46.7° -112.6° -121.1°   39.6°  -99.2° -139.3°   20.4° -122.9° -138.6°   H10                                                                   
H11    -140.4°   39.7°   15.3° -148.2°   57.6°  -28.8° -148.0°   23.7°  -58.8° -136.3°   H11                                                            
H12     -79.6°  117.8°   90.5°  -87.3°  133.8°   54.7° -106.5°  103.3°   22.6° -126.2°   80.9°   H12                                                     
H13      57.6° -100.6° -110.1°   51.2°  -88.1° -133.8°   32.3° -110.6° -143.4°   12.3° -125.1° -136.0°   H13                                              
H14    -121.9°   68.0°   41.7° -131.1°   85.5°   12.6° -145.5°   52.8°  -29.2° -151.9°   30.1°  -50.8° -146.2°   H14                                       
H15     -66.5°  137.1°  118.0°  -71.4°  146.1°   82.5°  -89.9°  126.4°   50.4° -110.0°  106.6°   28.2° -122.2°   76.8°   H15                                
H16      76.4°  -78.6°  -79.9°   73.4°  -72.4° -105.7°   57.7°  -84.2° -127.4°   41.3°  -95.1° -136.2°   30.4° -117.1° -141.5°   H16                         
H17    -118.1°   81.1°   65.3° -125.7°   95.6°   37.7° -144.9°   69.1°  -27.4° -164.7°   51.2°  -38.5° -170.1°   26.0°  -57.4°  143.1°   H17                  
H18     -50.5°  153.5°  148.5°  -51.1°  146.3°  112.8°  -66.1°  152.2°   80.7°  -84.1°  136.6°   58.2°  -96.3°  107.2°   30.5° -123.7°   85.8°   H18           
H19      82.1°  -73.8°  -61.5°   82.8°  -75.2°  -82.3°   72.3°  -73.0° -104.1°   60.9°  -76.7° -117.0°   52.1°  -94.2° -134.1°   23.9° -120.0° -132.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1bk5a_ :   (PRO229)  (GLY510)   [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Karyopherin alpha |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1pjmb_ :   (ALA222)  (PHE496)   [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin alpha |Mouse (Mus musculus) [TaxId: 10090]
 d1y2ac_ :   (CYS223)  (GLU493)   [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin alpha |Mouse (Mus musculus) [TaxId: 10090]
 d4e4va_ :   (CYS223)  (SER497)   [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3ul0b_ :   (ALA222)  (GLU493)   [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin alpha |Mouse (Mus musculus) [TaxId: 10090]
 d3knda_ :   (ALA222)  (SER497)   [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin alpha |Mouse (Mus musculus) [TaxId: 10090]
 d1ejli_ :   (ALA222)  (SER497)   [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin alpha |Mouse (Mus musculus) [TaxId: 10090]
 d3tj3a_ :   (GLU248)  (HIS502)   [view usage] : a.118.1.0 |alpha-alpha superhelix |ARM repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3tpma_ :   (ALA222)  (PHE496)   [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin alpha |Mouse (Mus musculus) [TaxId: 10090]
 d1q1sc_ :   (CYS223)  (PHE496)   [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin alpha |Mouse (Mus musculus) [TaxId: 10090]
 d4bqka_ :   (SER236)  (MET494)   [view usage] : a.118.1.0 |alpha-alpha superhelix |ARM repeat |automated matches |automated matches |Rice (Oryza sativa) [TaxId: 4530]
 d1q1tc_ :   (ALA222)  (PHE496)   [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin alpha |Mouse (Mus musculus) [TaxId: 10090]
 d1bk6a_ :   (PRO229)  (GLY510)   [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Karyopherin alpha |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d4b8oa_ :   (LEU215)  (MET494)   [view usage] : a.118.1.0 |alpha-alpha superhelix |ARM repeat |automated matches |automated matches |Oryza sativa [TaxId: 39947]
 d2c1ma_ :   (ALA222)  (SER497)   [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |automated matches |Mouse (Mus musculus) [TaxId: 10090]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 a.118