Protein Concepts Dictionary

Tableau information

Concept source:  d3ptda_  amino acid (a.a.) range (SER3)(ASN264)

nSSEs in this Concept: 19

String of secondary struct.elems. (SSEs) defining this concept: HHEHHHEEHEHHEEEHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (SER3)    (ASN9) H1
	   (TRP13)   (PRO18) H2
	   (ILE28)   (ASP33) E3
	   (ASP33)   (LEU39) H4
	   (ASN41)   (TRP47) H5
	   (PHE55)   (HIS61) H6
	   (ARG64)   (ASP74) E7
	   (ASN76)   (LEU80) E8
	   (THR90)  (ASN105) H9
	  (SER107)  (LYS116) E10
	  (SER127)  (VAL138) H11
	  (LYS150)  (ARG155) H12
	  (GLY156)  (LYS162) E13
	  (PHE184)  (ASN189) E14
	  (ASN191)  (LYS201) E15
	  (SER203)  (SER222) H16
	  (ASN226)  (PHE232) E17
	  (THR233)  (SER237) E18
	  (SER244)  (ASN264) H19

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                                   
H2     -141.6°   H2                                                                                                                            
E3       -5.7° -139.9°   E3                                                                                                                     
H4      -48.4°  169.6°   50.5°   H4                                                                                                              
H5      137.9°   21.9°  133.5° -158.0°   H5                                                                                                       
H6     -163.9°   43.6°  158.6°  128.1°  -37.9°   H6                                                                                                
E7       28.9° -115.8°  -31.1°  -73.0°  121.5° -158.8°   E7                                                                                         
E8     -112.6°   94.3°  109.4°  -80.7°  -78.0°   53.9°  140.0°   E8                                                                                  
H9      152.4°  -62.6°  156.5°  107.0°  -69.7°  -37.2° -149.2°   67.3°   H9                                                                           
E10     -40.1°  107.0°  -35.6°  -83.3°   97.9°  130.2°  -40.4°  107.9°  167.2°   E10                                                                   
H11     121.9°  -83.7°  127.2°   87.1°  -98.0°  -70.1°  118.6°  -88.9°  -33.0°  158.8°   H11                                                            
H12      50.0° -138.3°   55.5°  -41.3°  160.1° -141.2°   54.7° -118.0° -104.3°   88.5°   72.0°   H12                                                     
E13     -64.8°   87.6°  -59.8° -101.7°   74.2°  104.6°  -64.0°   93.5°  141.7°  -25.6° -171.2°  114.0°   E13                                              
E14     107.6°  -63.1°  112.2°  114.4°  -85.0°  -88.2°   83.7° -135.3°  -68.1°  115.2°  -52.7°   75.2°  121.2°   E14                                       
E15     -46.4°  149.9°  -43.9°   34.7°  128.1°  120.0°  -75.0°   66.4°  123.1°  -61.6°  117.0°  -71.5°  -71.6°  146.6°   E15                                
H16     147.6°   33.6°  151.3° -138.0°   52.5°  -47.7°  120.4°  -99.3°  -40.0°  134.3°  -51.1° -110.4°  120.1°  -40.6° -163.1°   H16                         
E17     -44.6°  159.4°  -43.4°   24.7° -137.5°  124.0°  -73.4°   70.2°  119.6°  -67.2°  108.7°  -62.3°  -80.1°  137.5°  -10.0° -158.5°   E17                  
E18     -22.4° -135.5°  -16.8°   54.5° -122.3°  141.7°  -44.2°   95.9°  158.1°  -29.2°  139.5°   70.3°  -48.7°  127.7°  -35.0°  161.9°   38.6°   E18           
H19     177.1°   35.5°  172.6° -134.5°   39.4°  -16.4°  148.9°  -68.9°  -30.2°  137.4°  -60.2° -131.9°  112.9°  -71.8°  135.3°  -31.4°  137.6°  156.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3ptda_ :     (SER3)  (ASN264)   [view usage] : c.1.18.2 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Bacterial PLC |Phosphatidylinositol-specific phospholipase C |Bacillus cereus [TaxId: 1396]
 d7ptda_ :     (SER3)  (ASN264)   [view usage] : c.1.18.2 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Bacterial PLC |Phosphatidylinositol-specific phospholipase C |Bacillus cereus [TaxId: 1396]
 d1t6ma_ :     (SER7)  (SER254)   [view usage] : c.1.18.2 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Bacterial PLC |automated matches |Bacillus thuringiensis [TaxId: 1428]
 d4ptda_ :     (SER3)  (ASN264)   [view usage] : c.1.18.2 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Bacterial PLC |Phosphatidylinositol-specific phospholipase C |Bacillus cereus [TaxId: 1396]
 d3ea3a_ :     (SER3)  (ASN264)   [view usage] : c.1.18.2 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Bacterial PLC |automated matches |Bacillus thuringiensis [TaxId: 1428]
 d2ptda_ :     (SER3)  (ASN264)   [view usage] : c.1.18.2 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Bacterial PLC |Phosphatidylinositol-specific phospholipase C |Bacillus cereus [TaxId: 1396]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1