Protein Concepts Dictionary

Tableau information

Concept source:  d4n0wc_  amino acid (a.a.) range (PRO42)(VAL308)

nSSEs in this Concept: 19

String of secondary struct.elems. (SSEs) defining this concept: HHEHEHEHEHEHEEHHHHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (PRO42)   (ASN54) H1
	   (CYS69)   (LEU86) H2
	   (GLU90)   (GLN95) E3
	   (SER98)  (MET110) H4
	  (ASP115)  (GLY119) E5
	  (ASN135)  (PHE141) H6
	  (ASN142)  (GLY147) E7
	  (TYR156)  (GLU165) H8
	  (LYS169)  (GLY174) E9
	  (PHE184)  (GLY195) H10
	  (TYR197)  (MET202) E11
	  (ALA206)  (GLY212) H12
	  (ASP222)  (THR227) E13
	  (GLY237)  (LYS243) E14
	  (PRO249)  (GLN259) H15
	  (LEU263)  (LEU278) H16
	  (PHE282)  (GLU291) H17
	  (ASN292)  (GLY304) H18
	  (GLY304)  (VAL308) E19

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                                   
H2     -144.6°   H2                                                                                                                            
E3      -65.6°  133.3°   E3                                                                                                                     
H4       61.5°  -84.7°  119.9°   H4                                                                                                              
E5     -157.9°   57.5°  -98.7°  139.2°   E5                                                                                                       
H6       62.8°  -82.1°  104.2°  -24.7° -138.8°   H6                                                                                                
E7      169.0°   45.0° -112.3°  124.9°  -14.3° -127.1°   E7                                                                                         
H8       26.0° -118.9°   80.7°  -39.9°  174.2°   36.9°  163.5°   H8                                                                                  
E9     -134.0°   81.3°  -78.5°  161.6°  -24.1° -159.1°  -38.1°  158.0°   E9                                                                           
H10     -42.7° -101.9°   93.8°  -26.2°  159.1°   20.4°  146.6°  -17.0°  171.6°   H10                                                                   
E11    -121.8°   93.0°  -66.1°  173.3°  -36.7° -160.9°  -50.9°  145.0°  -13.0°  159.9°   E11                                                            
H12     109.7°   71.3° -145.7°   80.3°   73.8°  102.6°   65.3° -109.9°   84.0° -104.4°   93.1°   H12                                                     
E13     -97.0°  113.6°  -36.3°  156.1°  -64.0°  137.9°  -78.2°  116.4°  -42.3°  130.1°  -29.8° -119.2°   E13                                              
E14      90.4°  -63.0°  154.4°  -34.9°  106.8°  -54.0°   92.9°  -73.7°  126.8°  -61.1°  138.8°   49.0°  168.0°   E14                                       
H15     -65.5°  129.8°   -6.0°  116.5° -100.7°   99.3° -113.8°   78.2°  -81.8°   90.2°  -69.7° -151.7°  -40.0°  151.3°   H15                                
H16     151.6°   37.1°  139.2° -100.1°   40.5° -110.1°   27.3° -139.9°   61.6° -125.3°   74.5°  -42.7°  103.8°  -66.3°  141.0°   H16                         
H17    -122.2°  -49.0°   86.3°  -98.6°  -69.3°  -78.4°  -67.5°  104.9°   81.1°   95.1°   84.4° -119.9°   83.9° -100.3°   81.8°  -79.7°   H17                  
H18    -124.1°  -53.4°   80.6° -106.9°  -64.4°  -86.1°  -64.6°  109.9°   73.8°  101.7°   76.3° -122.4°   75.5° -108.1°   76.5°   80.5°    8.5°   H18           
E19      38.3° -110.9°  103.4°   27.3° -155.8°   42.9°  143.9°  -27.4° -157.5°  -27.8°  152.5°  -82.4°  134.7°  -52.0°  102.3° -116.6° -121.3° -128.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4otld_ :    (SER41)  (VAL308)   [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Burkholderia cenocepacia [TaxId: 216591]
 d4n0wc_ :    (PRO42)  (VAL308)   [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Burkholderia cenocepacia [TaxId: 216591]
 d4n0wb_ :    (ALA43)  (VAL308)   [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Burkholderia cenocepacia [TaxId: 216591]
 d4otla_ :    (SER41)  (VAL308)   [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Burkholderia cenocepacia [TaxId: 216591]
 d2w7da_ :    (ARG37)  (LEU317)   [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Serine hydroxymethyltransferase |Bacillus stearothermophilus [TaxId: 1422]
 d4n0wa_ :    (PRO42)  (VAL308)   [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Burkholderia cenocepacia [TaxId: 216591]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.67