Protein Concepts Dictionary

Tableau information

Concept source:  d3ppoa_  amino acid (a.a.) range (TYR91)(LYS264)

nSSEs in this Concept: 19

String of secondary struct.elems. (SSEs) defining this concept: HHEEEHHEHHEHEHEEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (TYR91)  (GLY101) H1
	  (ASP107)  (PHE123) H2
	  (SER124)  (PHE128) E3
	  (GLY132)  (TYR137) E4
	  (TYR137)  (THR142) E5
	  (THR142)  (GLU149) H6
	  (VAL154)  (ASN160) H7
	  (TYR164)  (ASP169) E8
	  (ASP169)  (ARG175) H9
	  (TYR180)  (THR186) H10
	  (THR193)  (MET197) E11
	  (GLN198)  (ASN208) H12
	  (ASP212)  (ALA216) E13
	  (GLY221)  (ASP227) H14
	  (ASP227)  (ASP233) E15
	  (PRO239)  (CYS243) E16
	  (SER244)  (PRO248) E17
	  (GLU249)  (HIS255) H18
	  (LEU258)  (LYS264) H19

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                                   
H2       46.9°   H2                                                                                                                            
E3     -162.7° -148.2°   E3                                                                                                                     
E4       64.8°   96.9°   99.6°   E4                                                                                                              
E5     -131.8° -136.2°   35.4°  -67.5°   E5                                                                                                       
H6       80.9°  126.7°  -85.1°   61.9°   83.2°   H6                                                                                                
H7      -67.2°   95.9°   98.0°   -5.5°   64.6°   66.8°   H7                                                                                         
E8      -79.8°  -36.2°  117.3° -131.3°  130.6° -145.4° -129.1°   E8                                                                                  
H9       48.6°   87.1° -123.1°  -76.7° -124.9°  -42.5°  -82.0°  104.5°   H9                                                                           
H10     103.0°  145.4°  -65.1°  -79.3°  -74.4°  -23.6°  -83.2°  143.5°  -58.4°   H10                                                                   
E11    -100.4°  -53.6°   95.9° -133.3°  106.9° -163.9°  128.7°  -24.1° -128.1°  146.2°   E11                                                            
H12     126.2°  159.2°  -36.5°   66.1°  -27.6°   57.3°   66.0° -152.9°  -99.8°  -46.9°  129.4°   H12                                                     
E13     -84.6°  -52.7°  111.8° -148.0°  139.8° -124.9° -148.2°  -24.7°   90.5°  118.9°  -40.1° -145.8°   E13                                              
H14     134.4°  155.0°  -28.8°   71.2°   19.0°  -68.0°   70.1°  142.6° -110.4°  -56.0°  118.8°  -10.7° -140.5°   H14                                       
E15      46.1°   78.5° -129.5°   86.0°  136.5°   53.5°  -91.1°  -92.8°   11.9°   67.0° -116.2°  110.6°  -78.8° -121.1°   E15                                
E16     113.2°  -66.3°   82.3°  130.5°  -92.4° -163.7°  125.2°   38.8°  142.1° -140.3°   14.8° -114.7°   52.2° -104.1° -130.3°   E16                         
E17     -44.0°  -12.7°  153.1° -102.4° -148.9°  119.1° -102.5°  -35.8°   77.4°  134.5°  -57.5°  168.5°  -45.8° -167.6°   67.8°  -71.6°   E17                  
H18     119.1°  -73.7°   78.1°  148.6°   98.2° -147.0°  143.2°   39.3° -131.0° -125.3°   21.7° -114.1°  -42.1° -104.7° -119.9°   18.4°   75.1°   H18           
H19    -128.8°  164.4°  -34.0°   70.5°   30.9°  -56.2°   70.7°  151.3°  -98.5°  -43.6°  128.8°    5.2° -141.2°   12.4° -108.9°  114.4°  172.6°  112.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3r6ua_ :    (TYR71)  (LYS244)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bacillus subtilis [TaxId: 535025]
 d1sw2a_ :    (TYR63)  (ILE241)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Osmoprotection protein ProX |Archaeoglobus fulgidus [TaxId: 2234]
 d1sw1a_ :    (TYR63)  (LEU236)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Osmoprotection protein ProX |Archaeoglobus fulgidus [TaxId: 2234]
 d3ppoa_ :    (TYR91)  (LYS264)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
 d3ppna_ :    (TYR91)  (GLN268)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
 d3ppqa_ :    (TYR91)  (LYS264)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bacillus subtilis [TaxId: 535025]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.94