Protein Concepts Dictionary

Tableau information

Concept source:  d1dkaa_  amino acid (a.a.) range (GLY143)(LEU433)

nSSEs in this Concept: 19

String of secondary struct.elems. (SSEs) defining this concept: HEHEHEHEHEHHHEEHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLY143)  (THR149) H1
	  (GLY163)  (PRO168) E2
	  (ASP184)  (GLN199) H3
	  (ALA205)  (GLU210) E4
	  (TYR225)  (ARG236) H5
	  (MET238)  (GLU244) E6
	  (PHE256)  (GLY262) H7
	  (ASP266)  (SER271) E8
	  (SER271)  (ALA276) H9
	  (LEU280)  (SER286) E10
	  (SER286)  (GLY297) H11
	  (PRO310)  (GLN322) H12
	  (LEU326)  (PHE348) H13
	  (GLY352)  (GLY358) E14
	  (LEU360)  (VAL366) E15
	  (LEU378)  (LEU389) H16
	  (MET393)  (PRO399) E17
	  (GLY403)  (PRO409) E18
	  (SER414)  (LEU433) H19

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                                   
E2      -40.6°   E2                                                                                                                            
H3      123.0°  161.9°   H3                                                                                                                     
E4      -73.9°  -38.8°  144.4°   E4                                                                                                              
H5      117.9°  155.3°  -22.9° -165.7°   H5                                                                                                       
E6      -94.0°  -60.0°  125.9°  -21.3°  144.7°   E6                                                                                                
H7       44.4°   60.9° -115.0°   98.8°  -95.4°  119.0°   H7                                                                                         
E8     -104.2°  -80.5°  101.1°  -43.6°  122.5°  -26.3°  141.3°   E8                                                                                  
H9     -118.8°  -78.3° -116.4°   48.4° -122.5°   34.9°  118.5°  -48.8°   H9                                                                           
E10      76.1°   94.3°  -86.4°  129.2°  -64.1°  144.6°  -34.8°  170.4°  122.4°   E10                                                                   
H11     129.3° -158.8°   14.4° -130.2°   36.5° -111.5°  129.1°  -86.8° -105.7°  100.5°   H11                                                            
H12      45.2°   22.9° -158.7°   56.0° -137.8°   75.4°  -43.7°   99.6°   81.6°  -73.7°  172.5°   H12                                                     
H13     -37.7°  -56.8°  105.8°   67.1°  116.5°   78.9°  -81.3°   75.6°  113.6° -108.4°  103.7°   74.2°   H13                                              
E14     140.5°  118.4°  -79.1° -108.0°  -68.7°  -97.0°   98.0° -102.3°  -62.2°   73.0°  -80.8° -101.7° -174.8°   E14                                       
E15     -42.9°  -68.2°   94.1°   78.4°  104.5°   88.2°  -83.3°   80.5°  123.1° -105.2°   93.1°   83.9°  -12.1°  173.1°   E15                                
H16     125.4°   84.9° -110.3°   54.9° -115.8°   40.2°  121.7°  -50.9°    6.7°  121.0° -100.1°   87.1°  119.2°  -56.8°  128.1°   H16                         
E17     -64.2° -104.7°   60.5° -134.1°   54.6° -146.6°  -63.7°  131.0°  176.9°  -58.0°   71.3° -101.3°  -68.4°  116.0°  -58.5° -170.3°   E17                  
E18     128.4°   93.0° -105.1°   77.7°  -98.6°  -69.1°  100.8°  -81.9°  -34.7°   90.4° -102.0°   83.1°  144.6°  -30.4°  156.1°   31.2°  144.3°   E18           
H19     -54.3°  -80.6°   82.0°  -86.4°   94.3°   92.5°  -91.5°   79.5°  126.5° -107.7°   80.5°  -96.5°  -23.8°  161.1°  -12.6°  130.0°  -54.4°  161.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1d7ra_ :   (GLY143)  (LEU433)   [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Dialkylglycine decarboxylase |Pseudomonas cepacia [TaxId: 292]
 d3q8na_ :   (HIS180)  (GLU447)   [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
 d1dgda_ :   (GLY143)  (ALA432)   [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Dialkylglycine decarboxylase |Pseudomonas cepacia [TaxId: 292]
 d1z3za1 :   (GLY143)  (ARG431)   [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Dialkylglycine decarboxylase |Pseudomonas cepacia [TaxId: 292]
 d1dkaa_ :   (GLY143)  (LEU433)   [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Dialkylglycine decarboxylase |Pseudomonas cepacia [TaxId: 292]
 d4noga_ :   (THR175)  (ARG439)   [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Toxoplasma gondii [TaxId: 508771]
 d1oata_ :   (THR181)  (PHE439)   [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Ornithine aminotransferase |Human (Homo sapiens) [TaxId: 9606]
 d4adbb_ :   (GLN151)  (ARG403)   [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Escherichia coli [TaxId: 511693]
 d4nogb_ :   (THR175)  (LYS440)   [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Toxoplasma gondii [TaxId: 508771]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.67